Cluster: HRGMv2_2210_CGC40
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate: galactan
- Genome ID: HRGMv2_2210
- CGC Family ID: CGCFAM_00078
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_2237 | 2612325 | 2614376 | + | GH42 |
| TF | HRGMv2_2210_1 | HRGMv2_2210_1_2238 | 2614485 | 2615567 | - | HTH_AraC |
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_2239 | 2615862 | 2618306 | + | GH2 |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_2240 | 2618437 | 2619792 | + | 2.A.2.3.2 |
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_2241 | 2619892 | 2622243 | + | GH3 |
Gene ID: HRGMv2_2210_1_2237
Type: CAZyme
Location: 2612325 - 2614376 (+)
Type: CAZyme
Location: 2612325 - 2614376 (+)
Gene ID: HRGMv2_2210_1_2238
Type: TF
Location: 2614485 - 2615567 (-)
Type: TF
Location: 2614485 - 2615567 (-)
Gene ID: HRGMv2_2210_1_2239
Type: CAZyme
Location: 2615862 - 2618306 (+)
Type: CAZyme
Location: 2615862 - 2618306 (+)
Gene ID: HRGMv2_2210_1_2240
Type: TC
Location: 2618437 - 2619792 (+)
Type: TC
Location: 2618437 - 2619792 (+)
Gene ID: HRGMv2_2210_1_2241
Type: CAZyme
Location: 2619892 - 2622243 (+)
Type: CAZyme
Location: 2619892 - 2622243 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Muricomes
Species
Muricomes contortus_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.