Cluster: HRGMv2_2210_CGC34
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2210
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_1875 | 2205164 | 2206858 | + | 8.A.59.2.1 |
| TF | HRGMv2_2210_1 | HRGMv2_2210_1_1876 | 2206855 | 2208384 | + | HTH_AraC | HTH_AraC |
| STP | HRGMv2_2210_1 | HRGMv2_2210_1_1877 | 2208510 | 2208740 | + | PTS-HPr |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_1878 | 2209129 | 2210484 | + | 2.A.66.1.34 |
| peptidase | HRGMv2_2210_1 | HRGMv2_2210_1_1879 | 2210688 | 2212235 | + | C26.A07 |
| TF | HRGMv2_2210_1 | HRGMv2_2210_1_1880 | 2212304 | 2213833 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_1881 | 2213843 | 2215591 | - | 8.A.59.2.1 |
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_1882 | 2215766 | 2217685 | + | GH127 |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_1883 | 2217791 | 2219110 | + | 3.A.1.1.21 |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_1884 | 2219153 | 2220034 | + | 3.A.1.1.20 |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_1885 | 2220043 | 2220861 | + | 3.A.1.1.39 |
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_1886 | 2220881 | 2222071 | + | GH172 |
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_1887 | 2222085 | 2223272 | + | GH109 |
Gene ID: HRGMv2_2210_1_1875
Type: TC
Location: 2205164 - 2206858 (+)
Type: TC
Location: 2205164 - 2206858 (+)
Gene ID: HRGMv2_2210_1_1876
Type: TF
Location: 2206855 - 2208384 (+)
Type: TF
Location: 2206855 - 2208384 (+)
Gene ID: HRGMv2_2210_1_1877
Type: STP
Location: 2208510 - 2208740 (+)
Type: STP
Location: 2208510 - 2208740 (+)
Gene ID: HRGMv2_2210_1_1878
Type: TC
Location: 2209129 - 2210484 (+)
Type: TC
Location: 2209129 - 2210484 (+)
Gene ID: HRGMv2_2210_1_1879
Type: peptidase
Location: 2210688 - 2212235 (+)
Type: peptidase
Location: 2210688 - 2212235 (+)
Gene ID: HRGMv2_2210_1_1880
Type: TF
Location: 2212304 - 2213833 (-)
Type: TF
Location: 2212304 - 2213833 (-)
Gene ID: HRGMv2_2210_1_1881
Type: TC
Location: 2213843 - 2215591 (-)
Type: TC
Location: 2213843 - 2215591 (-)
Gene ID: HRGMv2_2210_1_1882
Type: CAZyme
Location: 2215766 - 2217685 (+)
Type: CAZyme
Location: 2215766 - 2217685 (+)
Gene ID: HRGMv2_2210_1_1883
Type: TC
Location: 2217791 - 2219110 (+)
Type: TC
Location: 2217791 - 2219110 (+)
Gene ID: HRGMv2_2210_1_1884
Type: TC
Location: 2219153 - 2220034 (+)
Type: TC
Location: 2219153 - 2220034 (+)
Gene ID: HRGMv2_2210_1_1885
Type: TC
Location: 2220043 - 2220861 (+)
Type: TC
Location: 2220043 - 2220861 (+)
Gene ID: HRGMv2_2210_1_1886
Type: CAZyme
Location: 2220881 - 2222071 (+)
Type: CAZyme
Location: 2220881 - 2222071 (+)
Gene ID: HRGMv2_2210_1_1887
Type: CAZyme
Location: 2222085 - 2223272 (+)
Type: CAZyme
Location: 2222085 - 2223272 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Muricomes
Species
Muricomes contortus_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.