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Cluster: HRGMv2_2210_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2210_1 HRGMv2_2210_1_130 147601 148983 - 2.A.8.1.8
pfam HRGMv2_2210_1 HRGMv2_2210_1_131 149010 150203 - MR_MLE_N | MR_MLE_C
pfam HRGMv2_2210_1 HRGMv2_2210_1_132 150563 151483 + Mem_trans | Mem_trans
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_133 151549 152679 + GT28
pfam HRGMv2_2210_1 HRGMv2_2210_1_134 152679 153284 + G3P_acyltransf
pfam HRGMv2_2210_1 HRGMv2_2210_1_135 153748 154917 + rve | LZ_Tnp_IS481 | HTH_28 | HTH_32 | rve_3
TC HRGMv2_2210_1 HRGMv2_2210_1_136 155035 155868 - 3.A.1.1.25
TC HRGMv2_2210_1 HRGMv2_2210_1_137 155865 156731 - 3.A.1.1.20
STP HRGMv2_2210_1 HRGMv2_2210_1_138 156734 158014 - SBP_bac_1
pfam HRGMv2_2210_1 HRGMv2_2210_1_139 158279 159274 - DnaJ | DnaJ_C
TC HRGMv2_2210_1 HRGMv2_2210_1_140 160410 162101 - 8.A.59.2.1
TF HRGMv2_2210_1 HRGMv2_2210_1_141 162098 163636 - HTH_AraC | HTH_AraC
TC HRGMv2_2210_1 HRGMv2_2210_1_142 163711 164538 - 3.A.1.1.47
TC HRGMv2_2210_1 HRGMv2_2210_1_143 164531 165397 - 3.A.1.1.11
Gene ID: HRGMv2_2210_1_130
Type: TC
Location: 147601 - 148983 (-)
Gene ID: HRGMv2_2210_1_131
Type: pfam
Location: 149010 - 150203 (-)
Gene ID: HRGMv2_2210_1_132
Type: pfam
Location: 150563 - 151483 (+)
Gene ID: HRGMv2_2210_1_133
Type: CAZyme
Location: 151549 - 152679 (+)
Gene ID: HRGMv2_2210_1_134
Type: pfam
Location: 152679 - 153284 (+)
Gene ID: HRGMv2_2210_1_135
Type: pfam
Location: 153748 - 154917 (+)
Gene ID: HRGMv2_2210_1_136
Type: TC
Location: 155035 - 155868 (-)
Gene ID: HRGMv2_2210_1_137
Type: TC
Location: 155865 - 156731 (-)
Gene ID: HRGMv2_2210_1_138
Type: STP
Location: 156734 - 158014 (-)
Gene ID: HRGMv2_2210_1_139
Type: pfam
Location: 158279 - 159274 (-)
Gene ID: HRGMv2_2210_1_140
Type: TC
Location: 160410 - 162101 (-)
Gene ID: HRGMv2_2210_1_141
Type: TF
Location: 162098 - 163636 (-)
Gene ID: HRGMv2_2210_1_142
Type: TC
Location: 163711 - 164538 (-)
Gene ID: HRGMv2_2210_1_143
Type: TC
Location: 164531 - 165397 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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