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Cluster: HRGMv2_2210_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_889 1054026 1056503 - GH116
TC HRGMv2_2210_1 HRGMv2_2210_1_890 1056552 1057391 - 3.A.1.1.18
TC HRGMv2_2210_1 HRGMv2_2210_1_891 1057395 1058279 - 3.A.1.1.18
STP HRGMv2_2210_1 HRGMv2_2210_1_892 1058368 1059696 - SBP_bac_1
TF HRGMv2_2210_1 HRGMv2_2210_1_893 1059802 1060776 - LacI
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_894 1062099 1063694 - CBM91 | GH43_11
TC HRGMv2_2210_1 HRGMv2_2210_1_895 1063723 1064550 - 3.A.1.1.45
TC HRGMv2_2210_1 HRGMv2_2210_1_896 1064564 1065448 - 3.A.1.1.21
STP HRGMv2_2210_1 HRGMv2_2210_1_897 1065529 1066815 - SBP_bac_1
TF HRGMv2_2210_1 HRGMv2_2210_1_898 1068248 1069849 - HTH_AraC | HTH_AraC
TC HRGMv2_2210_1 HRGMv2_2210_1_899 1070239 1071621 - 8.A.59.2.1
Gene ID: HRGMv2_2210_1_889
Type: CAZyme
Location: 1054026 - 1056503 (-)
Gene ID: HRGMv2_2210_1_890
Type: TC
Location: 1056552 - 1057391 (-)
Gene ID: HRGMv2_2210_1_891
Type: TC
Location: 1057395 - 1058279 (-)
Gene ID: HRGMv2_2210_1_892
Type: STP
Location: 1058368 - 1059696 (-)
Gene ID: HRGMv2_2210_1_893
Type: TF
Location: 1059802 - 1060776 (-)
Gene ID: HRGMv2_2210_1_894
Type: CAZyme
Location: 1062099 - 1063694 (-)
Gene ID: HRGMv2_2210_1_895
Type: TC
Location: 1063723 - 1064550 (-)
Gene ID: HRGMv2_2210_1_896
Type: TC
Location: 1064564 - 1065448 (-)
Gene ID: HRGMv2_2210_1_897
Type: STP
Location: 1065529 - 1066815 (-)
Gene ID: HRGMv2_2210_1_898
Type: TF
Location: 1068248 - 1069849 (-)
Gene ID: HRGMv2_2210_1_899
Type: TC
Location: 1070239 - 1071621 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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