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Cluster: HRGMv2_2210_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2210_1 HRGMv2_2210_1_522 623624 624721 - 3.A.1.2.9
TC HRGMv2_2210_1 HRGMv2_2210_1_523 624792 625754 - 3.A.1.2.8
TC HRGMv2_2210_1 HRGMv2_2210_1_524 625766 626746 - 3.A.1.2.9
TC HRGMv2_2210_1 HRGMv2_2210_1_525 626743 628248 - 3.A.1.2.20
TF HRGMv2_2210_1 HRGMv2_2210_1_526 628722 629732 - LacI
pfam HRGMv2_2210_1 HRGMv2_2210_1_527 629947 630942 - SPL
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_528 631139 632110 + GH179
TF HRGMv2_2210_1 HRGMv2_2210_1_529 632264 634822 - GerE
TC HRGMv2_2210_1 HRGMv2_2210_1_530 635050 641301 + 1.C.39.4.6
Gene ID: HRGMv2_2210_1_522
Type: TC
Location: 623624 - 624721 (-)
Gene ID: HRGMv2_2210_1_523
Type: TC
Location: 624792 - 625754 (-)
Gene ID: HRGMv2_2210_1_524
Type: TC
Location: 625766 - 626746 (-)
Gene ID: HRGMv2_2210_1_525
Type: TC
Location: 626743 - 628248 (-)
Gene ID: HRGMv2_2210_1_526
Type: TF
Location: 628722 - 629732 (-)
Gene ID: HRGMv2_2210_1_527
Type: pfam
Location: 629947 - 630942 (-)
Gene ID: HRGMv2_2210_1_528
Type: CAZyme
Location: 631139 - 632110 (+)
Gene ID: HRGMv2_2210_1_529
Type: TF
Location: 632264 - 634822 (-)
Gene ID: HRGMv2_2210_1_530
Type: TC
Location: 635050 - 641301 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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