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Cluster: HRGMv2_2204_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2204_56 HRGMv2_2204_56_53 59716 60066 + 1.E.14.1.1
TC HRGMv2_2204_56 HRGMv2_2204_56_54 60068 60760 + 2.A.122.1.4
TC HRGMv2_2204_56 HRGMv2_2204_56_55 60773 61363 + 2.A.115.2.14
TF HRGMv2_2204_56 HRGMv2_2204_56_56 61353 62081 + GntR
pfam HRGMv2_2204_56 HRGMv2_2204_56_57 62078 63037 + EamA | EamA
TC HRGMv2_2204_56 HRGMv2_2204_56_58 63001 64884 - 9.A.8.1.5
STP HRGMv2_2204_56 HRGMv2_2204_56_59 64900 65172 - FeoA
TC HRGMv2_2204_56 HRGMv2_2204_56_60 65507 66181 + 9.B.143.2.3
TF HRGMv2_2204_56 HRGMv2_2204_56_61 66178 67098 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2204_56 HRGMv2_2204_56_62 67197 68873 + GH13_31
TF HRGMv2_2204_56 HRGMv2_2204_56_63 68966 70132 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2204_56 HRGMv2_2204_56_64 70239 72305 + GH120
Gene ID: HRGMv2_2204_56_53
Type: TC
Location: 59716 - 60066 (+)
Gene ID: HRGMv2_2204_56_54
Type: TC
Location: 60068 - 60760 (+)
Gene ID: HRGMv2_2204_56_55
Type: TC
Location: 60773 - 61363 (+)
Gene ID: HRGMv2_2204_56_56
Type: TF
Location: 61353 - 62081 (+)
Gene ID: HRGMv2_2204_56_57
Type: pfam
Location: 62078 - 63037 (+)
Gene ID: HRGMv2_2204_56_58
Type: TC
Location: 63001 - 64884 (-)
Gene ID: HRGMv2_2204_56_59
Type: STP
Location: 64900 - 65172 (-)
Gene ID: HRGMv2_2204_56_60
Type: TC
Location: 65507 - 66181 (+)
Gene ID: HRGMv2_2204_56_61
Type: TF
Location: 66178 - 67098 (+)
Gene ID: HRGMv2_2204_56_62
Type: CAZyme
Location: 67197 - 68873 (+)
Gene ID: HRGMv2_2204_56_63
Type: TF
Location: 68966 - 70132 (+)
Gene ID: HRGMv2_2204_56_64
Type: CAZyme
Location: 70239 - 72305 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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