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Cluster: HRGMv2_2204_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2204_54 HRGMv2_2204_54_12 15519 17402 + 9.B.18.2.1
pfam HRGMv2_2204_54 HRGMv2_2204_54_13 17502 18704 + DegT_DnrJ_EryC1
TC HRGMv2_2204_54 HRGMv2_2204_54_14 18707 19405 + 9.B.18.1.3
CAZyme HRGMv2_2204_54 HRGMv2_2204_54_15 19419 20642 + GT4
CAZyme HRGMv2_2204_54 HRGMv2_2204_54_16 20635 21705 + GT2
pfam HRGMv2_2204_54 HRGMv2_2204_54_17 21755 22852 + Amino_oxidase | GLF | NAD_binding_8
pfam HRGMv2_2204_54 HRGMv2_2204_54_18 22877 24295 + Wzy_C
CAZyme HRGMv2_2204_54 HRGMv2_2204_54_19 24317 25423 + GT4
CAZyme HRGMv2_2204_54 HRGMv2_2204_54_20 25435 26436 + GT2
CAZyme HRGMv2_2204_54 HRGMv2_2204_54_21 26455 27462 + GT2
Gene ID: HRGMv2_2204_54_12
Type: TC
Location: 15519 - 17402 (+)
Gene ID: HRGMv2_2204_54_13
Type: pfam
Location: 17502 - 18704 (+)
Gene ID: HRGMv2_2204_54_14
Type: TC
Location: 18707 - 19405 (+)
Gene ID: HRGMv2_2204_54_15
Type: CAZyme
Location: 19419 - 20642 (+)
Gene ID: HRGMv2_2204_54_16
Type: CAZyme
Location: 20635 - 21705 (+)
Gene ID: HRGMv2_2204_54_17
Type: pfam
Location: 21755 - 22852 (+)
Gene ID: HRGMv2_2204_54_18
Type: pfam
Location: 22877 - 24295 (+)
Gene ID: HRGMv2_2204_54_19
Type: CAZyme
Location: 24317 - 25423 (+)
Gene ID: HRGMv2_2204_54_20
Type: CAZyme
Location: 25435 - 26436 (+)
Gene ID: HRGMv2_2204_54_21
Type: CAZyme
Location: 26455 - 27462 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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