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Cluster: HRGMv2_2204_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2204_54 HRGMv2_2204_54_1 43 1347 + 2.A.38.4.3
STP HRGMv2_2204_54 HRGMv2_2204_54_2 1364 2026 + TrkA_C
TC HRGMv2_2204_54 HRGMv2_2204_54_3 2045 3100 + 2.A.20.1.5
pfam HRGMv2_2204_54 HRGMv2_2204_54_4 3115 3738 + PhoU_div
pfam HRGMv2_2204_54 HRGMv2_2204_54_5 3768 4622 + VCA0040-like
CAZyme HRGMv2_2204_54 HRGMv2_2204_54_6 4793 7159 + GH73
TC HRGMv2_2204_54 HRGMv2_2204_54_7 7220 8542 - 2.A.40.2.1
Gene ID: HRGMv2_2204_54_1
Type: TC
Location: 43 - 1347 (+)
Gene ID: HRGMv2_2204_54_2
Type: STP
Location: 1364 - 2026 (+)
Gene ID: HRGMv2_2204_54_3
Type: TC
Location: 2045 - 3100 (+)
Gene ID: HRGMv2_2204_54_4
Type: pfam
Location: 3115 - 3738 (+)
Gene ID: HRGMv2_2204_54_5
Type: pfam
Location: 3768 - 4622 (+)
Gene ID: HRGMv2_2204_54_6
Type: CAZyme
Location: 4793 - 7159 (+)
Gene ID: HRGMv2_2204_54_7
Type: TC
Location: 7220 - 8542 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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