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Cluster: HRGMv2_2204_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2204_53 HRGMv2_2204_53_59 67882 69411 - GH79
TF HRGMv2_2204_53 HRGMv2_2204_53_60 69596 70858 + HTH_AraC | HTH_AraC
pfam HRGMv2_2204_53 HRGMv2_2204_53_61 70963 72510 + RACo_C_ter | RACo_linker | Raco_middle
CAZyme HRGMv2_2204_53 HRGMv2_2204_53_62 72591 76667 - GH16_8
CAZyme HRGMv2_2204_53 HRGMv2_2204_53_63 76911 78428 - GH31_19
CAZyme HRGMv2_2204_53 HRGMv2_2204_53_64 78439 80622 - GH36
pfam HRGMv2_2204_53 HRGMv2_2204_53_65 80637 81431 - Hydrolase | S6PP | Hydrolase_3
TF HRGMv2_2204_53 HRGMv2_2204_53_66 81613 82422 + HTH_AraC | HTH_AraC
TC HRGMv2_2204_53 HRGMv2_2204_53_67 82495 83181 - 1.C.113.1.3
Gene ID: HRGMv2_2204_53_59
Type: CAZyme
Location: 67882 - 69411 (-)
Gene ID: HRGMv2_2204_53_60
Type: TF
Location: 69596 - 70858 (+)
Gene ID: HRGMv2_2204_53_61
Type: pfam
Location: 70963 - 72510 (+)
Gene ID: HRGMv2_2204_53_62
Type: CAZyme
Location: 72591 - 76667 (-)
Gene ID: HRGMv2_2204_53_63
Type: CAZyme
Location: 76911 - 78428 (-)
Gene ID: HRGMv2_2204_53_64
Type: CAZyme
Location: 78439 - 80622 (-)
Gene ID: HRGMv2_2204_53_65
Type: pfam
Location: 80637 - 81431 (-)
Gene ID: HRGMv2_2204_53_66
Type: TF
Location: 81613 - 82422 (+)
Gene ID: HRGMv2_2204_53_67
Type: TC
Location: 82495 - 83181 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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