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Cluster: HRGMv2_2204_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2204_53 HRGMv2_2204_53_46 53105 54427 - GH4
TF HRGMv2_2204_53 HRGMv2_2204_53_47 54449 55366 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2204_53 HRGMv2_2204_53_48 55380 57614 - GH36
TC HRGMv2_2204_53 HRGMv2_2204_53_49 57686 58525 - 3.A.1.1.36
TC HRGMv2_2204_53 HRGMv2_2204_53_50 58538 59437 - 3.A.1.1.20
STP HRGMv2_2204_53 HRGMv2_2204_53_51 59528 60838 - SBP_bac_1
NULL(UNKNOWN) HRGMv2_2204_53 HRGMv2_2204_53_52 61015 61137 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2204_53 HRGMv2_2204_53_53 61277 61918 + 9.B.28.1.8
Gene ID: HRGMv2_2204_53_46
Type: CAZyme
Location: 53105 - 54427 (-)
Gene ID: HRGMv2_2204_53_47
Type: TF
Location: 54449 - 55366 (-)
Gene ID: HRGMv2_2204_53_48
Type: CAZyme
Location: 55380 - 57614 (-)
Gene ID: HRGMv2_2204_53_49
Type: TC
Location: 57686 - 58525 (-)
Gene ID: HRGMv2_2204_53_50
Type: TC
Location: 58538 - 59437 (-)
Gene ID: HRGMv2_2204_53_51
Type: STP
Location: 59528 - 60838 (-)
Gene ID: HRGMv2_2204_53_52
Type:
Location: 61015 - 61137 (-)
Gene ID: HRGMv2_2204_53_53
Type: TC
Location: 61277 - 61918 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2204_53_50 vegan > omnivore 1.84939 0.02628
HRGMv2_2204_53_51 vegan > omnivore 1.07554 0.02628

🧭 Explore Read Mapping of CGC

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