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Cluster: HRGMv2_2204_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2204_50 HRGMv2_2204_50_10 8841 11120 - 9.B.34.1.3
STP HRGMv2_2204_50 HRGMv2_2204_50_11 11286 12044 + Peptidase_M23
pfam HRGMv2_2204_50 HRGMv2_2204_50_12 12079 12561 + GIY-YIG
CAZyme HRGMv2_2204_50 HRGMv2_2204_50_13 12751 13854 - CE9
TF HRGMv2_2204_50 HRGMv2_2204_50_14 14015 15052 - LacI
pfam HRGMv2_2204_50 HRGMv2_2204_50_15 15359 16735 + SBP_bac_1 | SBP_bac_8
TC HRGMv2_2204_50 HRGMv2_2204_50_16 16759 17631 + 3.A.1.1.45
TC HRGMv2_2204_50 HRGMv2_2204_50_17 17631 18491 + 3.A.1.1.45
CAZyme HRGMv2_2204_50 HRGMv2_2204_50_18 18528 19874 + GH32
CAZyme HRGMv2_2204_50 HRGMv2_2204_50_19 19852 21696 + GH13_4
TF HRGMv2_2204_50 HRGMv2_2204_50_20 22626 23747 + LacI
STP HRGMv2_2204_50 HRGMv2_2204_50_21 23786 25144 + SBP_bac_1
TC HRGMv2_2204_50 HRGMv2_2204_50_22 25223 26170 + 3.A.1.1.4
TC HRGMv2_2204_50 HRGMv2_2204_50_23 26167 27048 + 3.A.1.1.34
CAZyme HRGMv2_2204_50 HRGMv2_2204_50_24 27138 29180 + GH42
Gene ID: HRGMv2_2204_50_10
Type: TC
Location: 8841 - 11120 (-)
Gene ID: HRGMv2_2204_50_11
Type: STP
Location: 11286 - 12044 (+)
Gene ID: HRGMv2_2204_50_12
Type: pfam
Location: 12079 - 12561 (+)
Gene ID: HRGMv2_2204_50_13
Type: CAZyme
Location: 12751 - 13854 (-)
Gene ID: HRGMv2_2204_50_14
Type: TF
Location: 14015 - 15052 (-)
Gene ID: HRGMv2_2204_50_15
Type: pfam
Location: 15359 - 16735 (+)
Gene ID: HRGMv2_2204_50_16
Type: TC
Location: 16759 - 17631 (+)
Gene ID: HRGMv2_2204_50_17
Type: TC
Location: 17631 - 18491 (+)
Gene ID: HRGMv2_2204_50_18
Type: CAZyme
Location: 18528 - 19874 (+)
Gene ID: HRGMv2_2204_50_19
Type: CAZyme
Location: 19852 - 21696 (+)
Gene ID: HRGMv2_2204_50_20
Type: TF
Location: 22626 - 23747 (+)
Gene ID: HRGMv2_2204_50_21
Type: STP
Location: 23786 - 25144 (+)
Gene ID: HRGMv2_2204_50_22
Type: TC
Location: 25223 - 26170 (+)
Gene ID: HRGMv2_2204_50_23
Type: TC
Location: 26167 - 27048 (+)
Gene ID: HRGMv2_2204_50_24
Type: CAZyme
Location: 27138 - 29180 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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