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Cluster: HRGMv2_2204_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2204_35 HRGMv2_2204_35_84 89548 90216 + CE4
STP HRGMv2_2204_35 HRGMv2_2204_35_85 90226 91545 + AAA
STP HRGMv2_2204_35 HRGMv2_2204_35_86 91605 92822 + Aminotran_1_2
TC HRGMv2_2204_35 HRGMv2_2204_35_87 92850 94241 + 2.A.66.1.32
STP HRGMv2_2204_35 HRGMv2_2204_35_88 94238 94768 - SKI
TF HRGMv2_2204_35 HRGMv2_2204_35_89 95004 95480 + MarR
TC HRGMv2_2204_35 HRGMv2_2204_35_90 95474 97642 + 3.A.1.135.6
TC HRGMv2_2204_35 HRGMv2_2204_35_91 97635 99473 + 3.A.1.135.6
Gene ID: HRGMv2_2204_35_84
Type: CAZyme
Location: 89548 - 90216 (+)
Gene ID: HRGMv2_2204_35_85
Type: STP
Location: 90226 - 91545 (+)
Gene ID: HRGMv2_2204_35_86
Type: STP
Location: 91605 - 92822 (+)
Gene ID: HRGMv2_2204_35_87
Type: TC
Location: 92850 - 94241 (+)
Gene ID: HRGMv2_2204_35_88
Type: STP
Location: 94238 - 94768 (-)
Gene ID: HRGMv2_2204_35_89
Type: TF
Location: 95004 - 95480 (+)
Gene ID: HRGMv2_2204_35_90
Type: TC
Location: 95474 - 97642 (+)
Gene ID: HRGMv2_2204_35_91
Type: TC
Location: 97635 - 99473 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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