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Cluster: HRGMv2_2204_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2204_23 HRGMv2_2204_23_26 28341 29621 - GH125
TF HRGMv2_2204_23 HRGMv2_2204_23_27 29722 31368 - HTH_AraC | HTH_AraC
TC HRGMv2_2204_23 HRGMv2_2204_23_28 31390 33237 - 8.A.59.2.1
sulfatase HRGMv2_2204_23 HRGMv2_2204_23_29 33318 34832 - S1_43
sulfatase HRGMv2_2204_23 HRGMv2_2204_23_30 34853 36232 - S1_27
CAZyme HRGMv2_2204_23 HRGMv2_2204_23_31 36244 37422 - GH88
TC HRGMv2_2204_23 HRGMv2_2204_23_32 37456 38280 - 3.A.1.1.36
TC HRGMv2_2204_23 HRGMv2_2204_23_33 38293 39195 - 3.A.1.1.11
TC HRGMv2_2204_23 HRGMv2_2204_23_34 39221 40516 - 3.A.1.1.7
TC HRGMv2_2204_23 HRGMv2_2204_23_35 40795 41991 + 2.A.1.15.18
Gene ID: HRGMv2_2204_23_26
Type: CAZyme
Location: 28341 - 29621 (-)
Gene ID: HRGMv2_2204_23_27
Type: TF
Location: 29722 - 31368 (-)
Gene ID: HRGMv2_2204_23_28
Type: TC
Location: 31390 - 33237 (-)
Gene ID: HRGMv2_2204_23_29
Type: sulfatase
Location: 33318 - 34832 (-)
Gene ID: HRGMv2_2204_23_30
Type: sulfatase
Location: 34853 - 36232 (-)
Gene ID: HRGMv2_2204_23_31
Type: CAZyme
Location: 36244 - 37422 (-)
Gene ID: HRGMv2_2204_23_32
Type: TC
Location: 37456 - 38280 (-)
Gene ID: HRGMv2_2204_23_33
Type: TC
Location: 38293 - 39195 (-)
Gene ID: HRGMv2_2204_23_34
Type: TC
Location: 39221 - 40516 (-)
Gene ID: HRGMv2_2204_23_35
Type: TC
Location: 40795 - 41991 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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