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Cluster: HRGMv2_2191_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2191_6 HRGMv2_2191_6_20 19487 19957 - 3.A.2.2.2
TC HRGMv2_2191_6 HRGMv2_2191_6_21 19960 21993 - 3.A.2.2.2
NULL(UNKNOWN) HRGMv2_2191_6 HRGMv2_2191_6_22 22033 22341 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2191_6 HRGMv2_2191_6_23 22560 24758 - GH36
CAZyme HRGMv2_2191_6 HRGMv2_2191_6_24 24804 26603 - GH13_4
TF HRGMv2_2191_6 HRGMv2_2191_6_25 26818 27831 - LacI
pfam HRGMv2_2191_6 HRGMv2_2191_6_26 27969 29825 - AAA_15 | AAA_15 | AAA_21
TC HRGMv2_2191_6 HRGMv2_2191_6_27 29959 31377 - 2.A.2.3.3
pfam HRGMv2_2191_6 HRGMv2_2191_6_28 31687 32334 - ABC2_membrane_5
TC HRGMv2_2191_6 HRGMv2_2191_6_29 32331 33194 - 3.A.1.149.1
TF HRGMv2_2191_6 HRGMv2_2191_6_30 33199 33573 - GntR
pfam HRGMv2_2191_6 HRGMv2_2191_6_31 33578 34324 - ABC2_membrane | ABC2_membrane_3
TC HRGMv2_2191_6 HRGMv2_2191_6_32 34321 35187 - 3.A.1.144.1
Gene ID: HRGMv2_2191_6_20
Type: TC
Location: 19487 - 19957 (-)
Gene ID: HRGMv2_2191_6_21
Type: TC
Location: 19960 - 21993 (-)
Gene ID: HRGMv2_2191_6_22
Type:
Location: 22033 - 22341 (-)
Gene ID: HRGMv2_2191_6_23
Type: CAZyme
Location: 22560 - 24758 (-)
Gene ID: HRGMv2_2191_6_24
Type: CAZyme
Location: 24804 - 26603 (-)
Gene ID: HRGMv2_2191_6_25
Type: TF
Location: 26818 - 27831 (-)
Gene ID: HRGMv2_2191_6_26
Type: pfam
Location: 27969 - 29825 (-)
Gene ID: HRGMv2_2191_6_27
Type: TC
Location: 29959 - 31377 (-)
Gene ID: HRGMv2_2191_6_28
Type: pfam
Location: 31687 - 32334 (-)
Gene ID: HRGMv2_2191_6_29
Type: TC
Location: 32331 - 33194 (-)
Gene ID: HRGMv2_2191_6_30
Type: TF
Location: 33199 - 33573 (-)
Gene ID: HRGMv2_2191_6_31
Type: pfam
Location: 33578 - 34324 (-)
Gene ID: HRGMv2_2191_6_32
Type: TC
Location: 34321 - 35187 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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