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Cluster: HRGMv2_2167_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2167_1 HRGMv2_2167_1_1180 1275711 1277525 - CE1
CAZyme HRGMv2_2167_1 HRGMv2_2167_1_1181 1277525 1279306 - CE1
TC HRGMv2_2167_1 HRGMv2_2167_1_1182 1279339 1280292 - 3.A.1.5.15
TC HRGMv2_2167_1 HRGMv2_2167_1_1183 1280294 1281274 - 3.A.1.5.2
TC HRGMv2_2167_1 HRGMv2_2167_1_1184 1281290 1282156 - 3.A.1.5.27
TC HRGMv2_2167_1 HRGMv2_2167_1_1185 1282156 1283124 - 3.A.1.5.11
TC HRGMv2_2167_1 HRGMv2_2167_1_1186 1283262 1284929 - 3.A.1.5.39
TF HRGMv2_2167_1 HRGMv2_2167_1_1187 1285215 1286201 + LacI
TC HRGMv2_2167_1 HRGMv2_2167_1_1188 1286329 1287057 - 9.B.120.1.1
Gene ID: HRGMv2_2167_1_1180
Type: CAZyme
Location: 1275711 - 1277525 (-)
Gene ID: HRGMv2_2167_1_1181
Type: CAZyme
Location: 1277525 - 1279306 (-)
Gene ID: HRGMv2_2167_1_1182
Type: TC
Location: 1279339 - 1280292 (-)
Gene ID: HRGMv2_2167_1_1183
Type: TC
Location: 1280294 - 1281274 (-)
Gene ID: HRGMv2_2167_1_1184
Type: TC
Location: 1281290 - 1282156 (-)
Gene ID: HRGMv2_2167_1_1185
Type: TC
Location: 1282156 - 1283124 (-)
Gene ID: HRGMv2_2167_1_1186
Type: TC
Location: 1283262 - 1284929 (-)
Gene ID: HRGMv2_2167_1_1187
Type: TF
Location: 1285215 - 1286201 (+)
Gene ID: HRGMv2_2167_1_1188
Type: TC
Location: 1286329 - 1287057 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2167_1_1185 vegetarian > vegan 1.31079 0.00649
HRGMv2_2167_1_1187 vegetarian > vegan 1.39547 0.00454

🧭 Explore Read Mapping of CGC

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