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Cluster: HRGMv2_2166_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2166_1 HRGMv2_2166_1_318 388103 389494 + 3.A.1.1.44
TC HRGMv2_2166_1 HRGMv2_2166_1_319 389629 390648 + 3.A.1.1.34
TC HRGMv2_2166_1 HRGMv2_2166_1_320 390650 391513 + 3.A.1.1.47
pfam HRGMv2_2166_1 HRGMv2_2166_1_321 391645 392823 + GlcNAc_2-epim
CAZyme HRGMv2_2166_1 HRGMv2_2166_1_322 392838 394007 + GH130_1
CAZyme HRGMv2_2166_1 HRGMv2_2166_1_323 394034 395056 + GH130_2
Gene ID: HRGMv2_2166_1_318
Type: TC
Location: 388103 - 389494 (+)
Gene ID: HRGMv2_2166_1_319
Type: TC
Location: 389629 - 390648 (+)
Gene ID: HRGMv2_2166_1_320
Type: TC
Location: 390650 - 391513 (+)
Gene ID: HRGMv2_2166_1_321
Type: pfam
Location: 391645 - 392823 (+)
Gene ID: HRGMv2_2166_1_322
Type: CAZyme
Location: 392838 - 394007 (+)
Gene ID: HRGMv2_2166_1_323
Type: CAZyme
Location: 394034 - 395056 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2166_1_323 vegetarian > omnivore 1.25200 0.01909
HRGMv2_2166_1_323 vegetarian > vegan 1.53064 0.01285

🧭 Explore Read Mapping of CGC

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