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Cluster: HRGMv2_2166_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2166_1 HRGMv2_2166_1_2532 3014667 3015344 - 9.B.143.2.3
CAZyme HRGMv2_2166_1 HRGMv2_2166_1_2533 3015779 3016834 + CE2
STP HRGMv2_2166_1 HRGMv2_2166_1_2534 3017144 3017692 + Sigma70_r2 | Sigma70_r4_2
NULL(UNKNOWN) HRGMv2_2166_1 HRGMv2_2166_1_2535 3017707 3018306 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2166_1 HRGMv2_2166_1_2536 3018592 3021006 + GH94
CAZyme HRGMv2_2166_1 HRGMv2_2166_1_2537 3021026 3023740 + GH94
TF HRGMv2_2166_1 HRGMv2_2166_1_2538 3023840 3024580 - HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_2166_1 HRGMv2_2166_1_2539 3024776 3026170 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2166_1 HRGMv2_2166_1_2540 3026328 3027287 + 3.A.1.1.4
TC HRGMv2_2166_1 HRGMv2_2166_1_2541 3027287 3028129 + 3.A.1.1.13
Gene ID: HRGMv2_2166_1_2532
Type: TC
Location: 3014667 - 3015344 (-)
Gene ID: HRGMv2_2166_1_2533
Type: CAZyme
Location: 3015779 - 3016834 (+)
Gene ID: HRGMv2_2166_1_2534
Type: STP
Location: 3017144 - 3017692 (+)
Gene ID: HRGMv2_2166_1_2535
Type:
Location: 3017707 - 3018306 (+)
Gene ID: HRGMv2_2166_1_2536
Type: CAZyme
Location: 3018592 - 3021006 (+)
Gene ID: HRGMv2_2166_1_2537
Type: CAZyme
Location: 3021026 - 3023740 (+)
Gene ID: HRGMv2_2166_1_2538
Type: TF
Location: 3023840 - 3024580 (-)
Gene ID: HRGMv2_2166_1_2539
Type:
Location: 3024776 - 3026170 (+)
Gene ID: HRGMv2_2166_1_2540
Type: TC
Location: 3026328 - 3027287 (+)
Gene ID: HRGMv2_2166_1_2541
Type: TC
Location: 3027287 - 3028129 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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