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Cluster: HRGMv2_2166_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2166_1 HRGMv2_2166_1_2340 2785904 2788369 + GH5_4
STP HRGMv2_2166_1 HRGMv2_2166_1_2341 2788501 2789943 + HD
CAZyme HRGMv2_2166_1 HRGMv2_2166_1_2342 2790311 2792458 + CBM34 | GH13_39
NULL(UNKNOWN) HRGMv2_2166_1 HRGMv2_2166_1_2343 2792466 2792735 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2166_1 HRGMv2_2166_1_2344 2793029 2793985 + 3.A.1.34.1
TC HRGMv2_2166_1 HRGMv2_2166_1_2345 2793979 2794773 + 3.A.1.34.1
Gene ID: HRGMv2_2166_1_2340
Type: CAZyme
Location: 2785904 - 2788369 (+)
Gene ID: HRGMv2_2166_1_2341
Type: STP
Location: 2788501 - 2789943 (+)
Gene ID: HRGMv2_2166_1_2342
Type: CAZyme
Location: 2790311 - 2792458 (+)
Gene ID: HRGMv2_2166_1_2343
Type:
Location: 2792466 - 2792735 (+)
Gene ID: HRGMv2_2166_1_2344
Type: TC
Location: 2793029 - 2793985 (+)
Gene ID: HRGMv2_2166_1_2345
Type: TC
Location: 2793979 - 2794773 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2166_1_2340 vegan > omnivore 2.24160 0.00067
HRGMv2_2166_1_2340 vegetarian > omnivore 3.36693 0.01909
HRGMv2_2166_1_2340 vegetarian > vegan 1.12533 0.03511
HRGMv2_2166_1_2341 vegetarian > omnivore 1.75127 0.01909
HRGMv2_2166_1_2341 vegetarian > vegan 1.31320 0.03511

🧭 Explore Read Mapping of CGC

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