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Cluster: HRGMv2_2166_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2166_1 HRGMv2_2166_1_2274 2708314 2709543 + 2.A.49.9.3
TF HRGMv2_2166_1 HRGMv2_2166_1_2275 2709547 2710581 - LacI
TC HRGMv2_2166_1 HRGMv2_2166_1_2276 2710826 2712148 + 3.A.1.1.20
TC HRGMv2_2166_1 HRGMv2_2166_1_2277 2712148 2713050 + 3.A.1.1.20
TC HRGMv2_2166_1 HRGMv2_2166_1_2278 2713022 2713873 + 3.A.1.1.20
TC HRGMv2_2166_1 HRGMv2_2166_1_2279 2713876 2714970 + 3.A.1.1.27
CAZyme HRGMv2_2166_1 HRGMv2_2166_1_2280 2715028 2716482 + GH32
STP HRGMv2_2166_1 HRGMv2_2166_1_2281 2716494 2717477 + PfkB
pfam HRGMv2_2166_1 HRGMv2_2166_1_2282 2717750 2718106 + Hpt
TC HRGMv2_2166_1 HRGMv2_2166_1_2283 2718232 2719320 + 8.A.59.4.2
Gene ID: HRGMv2_2166_1_2274
Type: TC
Location: 2708314 - 2709543 (+)
Gene ID: HRGMv2_2166_1_2275
Type: TF
Location: 2709547 - 2710581 (-)
Gene ID: HRGMv2_2166_1_2276
Type: TC
Location: 2710826 - 2712148 (+)
Gene ID: HRGMv2_2166_1_2277
Type: TC
Location: 2712148 - 2713050 (+)
Gene ID: HRGMv2_2166_1_2278
Type: TC
Location: 2713022 - 2713873 (+)
Gene ID: HRGMv2_2166_1_2279
Type: TC
Location: 2713876 - 2714970 (+)
Gene ID: HRGMv2_2166_1_2280
Type: CAZyme
Location: 2715028 - 2716482 (+)
Gene ID: HRGMv2_2166_1_2281
Type: STP
Location: 2716494 - 2717477 (+)
Gene ID: HRGMv2_2166_1_2282
Type: pfam
Location: 2717750 - 2718106 (+)
Gene ID: HRGMv2_2166_1_2283
Type: TC
Location: 2718232 - 2719320 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2166_1_2277 vegan > omnivore 1.09312 0.00067
HRGMv2_2166_1_2278 vegan > omnivore 1.99310 0.00067

🧭 Explore Read Mapping of CGC

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