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Cluster: HRGMv2_2166_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2166_1 HRGMv2_2166_1_135 169893 171227 - 9.A.40.2.2
pfam HRGMv2_2166_1 HRGMv2_2166_1_136 171462 172052 + Zn_dep_PLPC
pfam HRGMv2_2166_1 HRGMv2_2166_1_137 172783 173229 + YqeY
CAZyme HRGMv2_2166_1 HRGMv2_2166_1_138 173252 174202 + GT2
TC HRGMv2_2166_1 HRGMv2_2166_1_139 174428 176059 - 3.A.1.121.4
CAZyme HRGMv2_2166_1 HRGMv2_2166_1_140 176379 178286 + GH13_11
NULL(UNKNOWN) HRGMv2_2166_1 HRGMv2_2166_1_141 178484 178672 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2166_1 HRGMv2_2166_1_142 178989 179483 + DUF5721
TC HRGMv2_2166_1 HRGMv2_2166_1_143 179539 181278 + 3.A.1.135.5
TC HRGMv2_2166_1 HRGMv2_2166_1_144 181298 183211 + 3.A.1.135.5
Gene ID: HRGMv2_2166_1_135
Type: TC
Location: 169893 - 171227 (-)
Gene ID: HRGMv2_2166_1_136
Type: pfam
Location: 171462 - 172052 (+)
Gene ID: HRGMv2_2166_1_137
Type: pfam
Location: 172783 - 173229 (+)
Gene ID: HRGMv2_2166_1_138
Type: CAZyme
Location: 173252 - 174202 (+)
Gene ID: HRGMv2_2166_1_139
Type: TC
Location: 174428 - 176059 (-)
Gene ID: HRGMv2_2166_1_140
Type: CAZyme
Location: 176379 - 178286 (+)
Gene ID: HRGMv2_2166_1_141
Type:
Location: 178484 - 178672 (-)
Gene ID: HRGMv2_2166_1_142
Type: pfam
Location: 178989 - 179483 (+)
Gene ID: HRGMv2_2166_1_143
Type: TC
Location: 179539 - 181278 (+)
Gene ID: HRGMv2_2166_1_144
Type: TC
Location: 181298 - 183211 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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