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Cluster: HRGMv2_2157_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2157_30 HRGMv2_2157_30_10 10897 12552 - 3.A.1.106.2
pfam HRGMv2_2157_30 HRGMv2_2157_30_11 12878 13609 - His_Phos_1
NULL(UNKNOWN) HRGMv2_2157_30 HRGMv2_2157_30_12 13735 13911 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2157_30 HRGMv2_2157_30_13 14043 15395 - 3.A.1.1.11
pfam HRGMv2_2157_30 HRGMv2_2157_30_14 15406 16308 - BPD_transp_1
TC HRGMv2_2157_30 HRGMv2_2157_30_15 16555 17877 + 3.A.1.1.7
CAZyme HRGMv2_2157_30 HRGMv2_2157_30_16 17962 19230 + GH109
TC HRGMv2_2157_30 HRGMv2_2157_30_17 19286 21250 + 8.A.59.2.1
TF HRGMv2_2157_30 HRGMv2_2157_30_18 21222 22769 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2157_30 HRGMv2_2157_30_19 22814 24481 + GH123
Gene ID: HRGMv2_2157_30_10
Type: TC
Location: 10897 - 12552 (-)
Gene ID: HRGMv2_2157_30_11
Type: pfam
Location: 12878 - 13609 (-)
Gene ID: HRGMv2_2157_30_12
Type:
Location: 13735 - 13911 (-)
Gene ID: HRGMv2_2157_30_13
Type: TC
Location: 14043 - 15395 (-)
Gene ID: HRGMv2_2157_30_14
Type: pfam
Location: 15406 - 16308 (-)
Gene ID: HRGMv2_2157_30_15
Type: TC
Location: 16555 - 17877 (+)
Gene ID: HRGMv2_2157_30_16
Type: CAZyme
Location: 17962 - 19230 (+)
Gene ID: HRGMv2_2157_30_17
Type: TC
Location: 19286 - 21250 (+)
Gene ID: HRGMv2_2157_30_18
Type: TF
Location: 21222 - 22769 (+)
Gene ID: HRGMv2_2157_30_19
Type: CAZyme
Location: 22814 - 24481 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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