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Cluster: HRGMv2_2157_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2157_18 HRGMv2_2157_18_14 12315 14234 + GT2 | GT2
CAZyme HRGMv2_2157_18 HRGMv2_2157_18_15 14273 15388 + GT2
CAZyme HRGMv2_2157_18 HRGMv2_2157_18_16 15418 17682 + GT2 | GT2
pfam HRGMv2_2157_18 HRGMv2_2157_18_17 17708 18124 + CTP_transf_like
NULL(UNKNOWN) HRGMv2_2157_18 HRGMv2_2157_18_18 18121 18903 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2157_18 HRGMv2_2157_18_19 18906 19637 + 3.A.1.103.4
CAZyme HRGMv2_2157_18 HRGMv2_2157_18_20 19643 20656 + GT2
CAZyme HRGMv2_2157_18 HRGMv2_2157_18_21 20658 21719 - GT2
TC HRGMv2_2157_18 HRGMv2_2157_18_22 21989 23377 + 9.B.18.1.3
Gene ID: HRGMv2_2157_18_14
Type: CAZyme
Location: 12315 - 14234 (+)
Gene ID: HRGMv2_2157_18_15
Type: CAZyme
Location: 14273 - 15388 (+)
Gene ID: HRGMv2_2157_18_16
Type: CAZyme
Location: 15418 - 17682 (+)
Gene ID: HRGMv2_2157_18_17
Type: pfam
Location: 17708 - 18124 (+)
Gene ID: HRGMv2_2157_18_18
Type:
Location: 18121 - 18903 (+)
Gene ID: HRGMv2_2157_18_19
Type: TC
Location: 18906 - 19637 (+)
Gene ID: HRGMv2_2157_18_20
Type: CAZyme
Location: 19643 - 20656 (+)
Gene ID: HRGMv2_2157_18_21
Type: CAZyme
Location: 20658 - 21719 (-)
Gene ID: HRGMv2_2157_18_22
Type: TC
Location: 21989 - 23377 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2157_18_17 vegan > omnivore 3.96376 0.02017

🧭 Explore Read Mapping of CGC

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