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Cluster: HRGMv2_2157_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2157_113 HRGMv2_2157_113_2 1105 2862 + 9.B.33.1.1
TF HRGMv2_2157_113 HRGMv2_2157_113_3 2837 3598 + HTH_AraC | HTH_AraC
STP HRGMv2_2157_113 HRGMv2_2157_113_4 3570 4844 + SBP_bac_1
TC HRGMv2_2157_113 HRGMv2_2157_113_5 5086 6354 + 3.A.1.1.47
TC HRGMv2_2157_113 HRGMv2_2157_113_6 6436 7347 + 3.A.1.1.47
TC HRGMv2_2157_113 HRGMv2_2157_113_7 7360 8214 + 3.A.1.1.47
CAZyme HRGMv2_2157_113 HRGMv2_2157_113_8 8255 9574 + GH29
Gene ID: HRGMv2_2157_113_2
Type: TC
Location: 1105 - 2862 (+)
Gene ID: HRGMv2_2157_113_3
Type: TF
Location: 2837 - 3598 (+)
Gene ID: HRGMv2_2157_113_4
Type: STP
Location: 3570 - 4844 (+)
Gene ID: HRGMv2_2157_113_5
Type: TC
Location: 5086 - 6354 (+)
Gene ID: HRGMv2_2157_113_6
Type: TC
Location: 6436 - 7347 (+)
Gene ID: HRGMv2_2157_113_7
Type: TC
Location: 7360 - 8214 (+)
Gene ID: HRGMv2_2157_113_8
Type: CAZyme
Location: 8255 - 9574 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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