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Cluster: HRGMv2_2156_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2156_22 HRGMv2_2156_22_20 19369 20028 + 1.C.113.1.2
pfam HRGMv2_2156_22 HRGMv2_2156_22_21 20157 21068 + Cation_efflux
CAZyme HRGMv2_2156_22 HRGMv2_2156_22_22 21065 23092 - GH42
CAZyme HRGMv2_2156_22 HRGMv2_2156_22_23 23108 25420 - GH35
TC HRGMv2_2156_22 HRGMv2_2156_22_24 25450 26268 - 3.A.1.1.34
TC HRGMv2_2156_22 HRGMv2_2156_22_25 26265 27185 - 3.A.1.1.23
STP HRGMv2_2156_22 HRGMv2_2156_22_26 27249 28577 - SBP_bac_1
TC HRGMv2_2156_22 HRGMv2_2156_22_27 28661 30421 - 9.B.33.1.1
Gene ID: HRGMv2_2156_22_20
Type: TC
Location: 19369 - 20028 (+)
Gene ID: HRGMv2_2156_22_21
Type: pfam
Location: 20157 - 21068 (+)
Gene ID: HRGMv2_2156_22_22
Type: CAZyme
Location: 21065 - 23092 (-)
Gene ID: HRGMv2_2156_22_23
Type: CAZyme
Location: 23108 - 25420 (-)
Gene ID: HRGMv2_2156_22_24
Type: TC
Location: 25450 - 26268 (-)
Gene ID: HRGMv2_2156_22_25
Type: TC
Location: 26265 - 27185 (-)
Gene ID: HRGMv2_2156_22_26
Type: STP
Location: 27249 - 28577 (-)
Gene ID: HRGMv2_2156_22_27
Type: TC
Location: 28661 - 30421 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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