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Cluster: HRGMv2_2156_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2156_15 HRGMv2_2156_15_45 49977 52358 - GT4
pfam HRGMv2_2156_15 HRGMv2_2156_15_46 52455 53687 - Glyphos_transf
CAZyme HRGMv2_2156_15 HRGMv2_2156_15_47 53689 54510 - GT2
pfam HRGMv2_2156_15 HRGMv2_2156_15_48 54510 55337 - LicD
TC HRGMv2_2156_15 HRGMv2_2156_15_49 55340 56728 - 9.B.18.1.3
CAZyme HRGMv2_2156_15 HRGMv2_2156_15_50 57012 58073 + GT2
CAZyme HRGMv2_2156_15 HRGMv2_2156_15_51 58075 59088 - GT2
TC HRGMv2_2156_15 HRGMv2_2156_15_52 59094 59825 - 3.A.1.103.4
NULL(UNKNOWN) HRGMv2_2156_15 HRGMv2_2156_15_53 59828 60610 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2156_15 HRGMv2_2156_15_54 60607 61023 - CTP_transf_like
CAZyme HRGMv2_2156_15 HRGMv2_2156_15_55 61049 63313 - GT2 | GT2
CAZyme HRGMv2_2156_15 HRGMv2_2156_15_56 63351 64466 - GT2
CAZyme HRGMv2_2156_15 HRGMv2_2156_15_57 64505 66424 - GT2 | GT2
Gene ID: HRGMv2_2156_15_45
Type: CAZyme
Location: 49977 - 52358 (-)
Gene ID: HRGMv2_2156_15_46
Type: pfam
Location: 52455 - 53687 (-)
Gene ID: HRGMv2_2156_15_47
Type: CAZyme
Location: 53689 - 54510 (-)
Gene ID: HRGMv2_2156_15_48
Type: pfam
Location: 54510 - 55337 (-)
Gene ID: HRGMv2_2156_15_49
Type: TC
Location: 55340 - 56728 (-)
Gene ID: HRGMv2_2156_15_50
Type: CAZyme
Location: 57012 - 58073 (+)
Gene ID: HRGMv2_2156_15_51
Type: CAZyme
Location: 58075 - 59088 (-)
Gene ID: HRGMv2_2156_15_52
Type: TC
Location: 59094 - 59825 (-)
Gene ID: HRGMv2_2156_15_53
Type:
Location: 59828 - 60610 (-)
Gene ID: HRGMv2_2156_15_54
Type: pfam
Location: 60607 - 61023 (-)
Gene ID: HRGMv2_2156_15_55
Type: CAZyme
Location: 61049 - 63313 (-)
Gene ID: HRGMv2_2156_15_56
Type: CAZyme
Location: 63351 - 64466 (-)
Gene ID: HRGMv2_2156_15_57
Type: CAZyme
Location: 64505 - 66424 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2156_15_54 vegan > omnivore 4.16638 0.00665

🧭 Explore Read Mapping of CGC

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