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Cluster: HRGMv2_2156_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2156_12 HRGMv2_2156_12_63 66389 67780 - GH32
TC HRGMv2_2156_12 HRGMv2_2156_12_64 67816 68655 - 3.A.1.1.46
TC HRGMv2_2156_12 HRGMv2_2156_12_65 68648 69532 - 3.A.1.1.7
STP HRGMv2_2156_12 HRGMv2_2156_12_66 69598 70890 - SBP_bac_1
TF HRGMv2_2156_12 HRGMv2_2156_12_67 71042 72652 - HTH_AraC | HTH_AraC
TC HRGMv2_2156_12 HRGMv2_2156_12_68 72624 74423 - 9.B.33.1.1
CAZyme HRGMv2_2156_12 HRGMv2_2156_12_69 74696 76219 + GH77
pfam HRGMv2_2156_12 HRGMv2_2156_12_70 76241 77125 + ARMT1-like_dom
TC HRGMv2_2156_12 HRGMv2_2156_12_71 77306 78418 + 3.A.1.1.26
TF HRGMv2_2156_12 HRGMv2_2156_12_72 78515 79597 + 0037176
TC HRGMv2_2156_12 HRGMv2_2156_12_73 79591 80655 - 3.A.1.6.5
TC HRGMv2_2156_12 HRGMv2_2156_12_74 80655 81350 - 3.A.1.8.1
Gene ID: HRGMv2_2156_12_63
Type: CAZyme
Location: 66389 - 67780 (-)
Gene ID: HRGMv2_2156_12_64
Type: TC
Location: 67816 - 68655 (-)
Gene ID: HRGMv2_2156_12_65
Type: TC
Location: 68648 - 69532 (-)
Gene ID: HRGMv2_2156_12_66
Type: STP
Location: 69598 - 70890 (-)
Gene ID: HRGMv2_2156_12_67
Type: TF
Location: 71042 - 72652 (-)
Gene ID: HRGMv2_2156_12_68
Type: TC
Location: 72624 - 74423 (-)
Gene ID: HRGMv2_2156_12_69
Type: CAZyme
Location: 74696 - 76219 (+)
Gene ID: HRGMv2_2156_12_70
Type: pfam
Location: 76241 - 77125 (+)
Gene ID: HRGMv2_2156_12_71
Type: TC
Location: 77306 - 78418 (+)
Gene ID: HRGMv2_2156_12_72
Type: TF
Location: 78515 - 79597 (+)
Gene ID: HRGMv2_2156_12_73
Type: TC
Location: 79591 - 80655 (-)
Gene ID: HRGMv2_2156_12_74
Type: TC
Location: 80655 - 81350 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2156_12_63 vegan > omnivore 1.14190 0.00665
HRGMv2_2156_12_66 vegan > omnivore 2.24568 0.00665

🧭 Explore Read Mapping of CGC

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