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Cluster: HRGMv2_2156_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2156_10 HRGMv2_2156_10_41 39537 40757 - GT2
TC HRGMv2_2156_10 HRGMv2_2156_10_42 40745 42049 - 3.A.1.103.5
TC HRGMv2_2156_10 HRGMv2_2156_10_43 42076 42918 - 3.A.1.103.5
CAZyme HRGMv2_2156_10 HRGMv2_2156_10_44 42923 44587 - GT2
CAZyme HRGMv2_2156_10 HRGMv2_2156_10_45 44604 45752 - GT4
pfam HRGMv2_2156_10 HRGMv2_2156_10_46 45964 47274 - UDPG_MGDP_dh | NAD_binding_2 | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_2156_10 HRGMv2_2156_10_47 47279 48295 - GT2
CAZyme HRGMv2_2156_10 HRGMv2_2156_10_48 48283 49455 - GT4
CAZyme HRGMv2_2156_10 HRGMv2_2156_10_49 49445 50161 - GT32
Gene ID: HRGMv2_2156_10_41
Type: CAZyme
Location: 39537 - 40757 (-)
Gene ID: HRGMv2_2156_10_42
Type: TC
Location: 40745 - 42049 (-)
Gene ID: HRGMv2_2156_10_43
Type: TC
Location: 42076 - 42918 (-)
Gene ID: HRGMv2_2156_10_44
Type: CAZyme
Location: 42923 - 44587 (-)
Gene ID: HRGMv2_2156_10_45
Type: CAZyme
Location: 44604 - 45752 (-)
Gene ID: HRGMv2_2156_10_46
Type: pfam
Location: 45964 - 47274 (-)
Gene ID: HRGMv2_2156_10_47
Type: CAZyme
Location: 47279 - 48295 (-)
Gene ID: HRGMv2_2156_10_48
Type: CAZyme
Location: 48283 - 49455 (-)
Gene ID: HRGMv2_2156_10_49
Type: CAZyme
Location: 49445 - 50161 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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