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Cluster: HRGMv2_2156_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2156_7 HRGMv2_2156_7_46 57223 59058 - 3.A.1.135.6
TC HRGMv2_2156_7 HRGMv2_2156_7_47 59055 61217 - 3.A.1.135.6
TF HRGMv2_2156_7 HRGMv2_2156_7_48 61211 61714 - MarR
pfam HRGMv2_2156_7 HRGMv2_2156_7_49 61943 62116 - DUF4250
TC HRGMv2_2156_7 HRGMv2_2156_7_50 62113 64707 - 3.A.9.1.2
CAZyme HRGMv2_2156_7 HRGMv2_2156_7_51 64834 67503 - CBM67 | GH78
pfam HRGMv2_2156_7 HRGMv2_2156_7_52 67596 68396 - BKACE
pfam HRGMv2_2156_7 HRGMv2_2156_7_53 68411 69823 - SBD_N | NBD_C
CAZyme HRGMv2_2156_7 HRGMv2_2156_7_54 69846 71807 - GH127
CAZyme HRGMv2_2156_7 HRGMv2_2156_7_55 71879 73885 - GH42
Gene ID: HRGMv2_2156_7_46
Type: TC
Location: 57223 - 59058 (-)
Gene ID: HRGMv2_2156_7_47
Type: TC
Location: 59055 - 61217 (-)
Gene ID: HRGMv2_2156_7_48
Type: TF
Location: 61211 - 61714 (-)
Gene ID: HRGMv2_2156_7_49
Type: pfam
Location: 61943 - 62116 (-)
Gene ID: HRGMv2_2156_7_50
Type: TC
Location: 62113 - 64707 (-)
Gene ID: HRGMv2_2156_7_51
Type: CAZyme
Location: 64834 - 67503 (-)
Gene ID: HRGMv2_2156_7_52
Type: pfam
Location: 67596 - 68396 (-)
Gene ID: HRGMv2_2156_7_53
Type: pfam
Location: 68411 - 69823 (-)
Gene ID: HRGMv2_2156_7_54
Type: CAZyme
Location: 69846 - 71807 (-)
Gene ID: HRGMv2_2156_7_55
Type: CAZyme
Location: 71879 - 73885 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2156_7_47 vegan > omnivore 1.17052 0.00665
HRGMv2_2156_7_52 vegan > omnivore 3.72157 0.00665

🧭 Explore Read Mapping of CGC

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