dbCAN Logo

Cluster: HRGMv2_2156_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2156_6 HRGMv2_2156_6_2 1860 3560 - 9.B.33.1.1
TF HRGMv2_2156_6 HRGMv2_2156_6_3 3535 5073 - HTH_AraC | HTH_AraC
TC HRGMv2_2156_6 HRGMv2_2156_6_4 5195 6031 - 3.A.1.1.45
TC HRGMv2_2156_6 HRGMv2_2156_6_5 6031 6936 - 3.A.1.1.45
TC HRGMv2_2156_6 HRGMv2_2156_6_6 6953 8275 - 3.A.1.1.45
pfam HRGMv2_2156_6 HRGMv2_2156_6_7 8551 9414 - F_bP_aldolase
TF HRGMv2_2156_6 HRGMv2_2156_6_8 9710 10060 + HTH_5
CAZyme HRGMv2_2156_6 HRGMv2_2156_6_9 10144 12261 - CBM34 | GH13_39
TC HRGMv2_2156_6 HRGMv2_2156_6_10 12558 14405 - 3.A.16.1.1
Gene ID: HRGMv2_2156_6_2
Type: TC
Location: 1860 - 3560 (-)
Gene ID: HRGMv2_2156_6_3
Type: TF
Location: 3535 - 5073 (-)
Gene ID: HRGMv2_2156_6_4
Type: TC
Location: 5195 - 6031 (-)
Gene ID: HRGMv2_2156_6_5
Type: TC
Location: 6031 - 6936 (-)
Gene ID: HRGMv2_2156_6_6
Type: TC
Location: 6953 - 8275 (-)
Gene ID: HRGMv2_2156_6_7
Type: pfam
Location: 8551 - 9414 (-)
Gene ID: HRGMv2_2156_6_8
Type: TF
Location: 9710 - 10060 (+)
Gene ID: HRGMv2_2156_6_9
Type: CAZyme
Location: 10144 - 12261 (-)
Gene ID: HRGMv2_2156_6_10
Type: TC
Location: 12558 - 14405 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List