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Cluster: HRGMv2_2156_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2156_3 HRGMv2_2156_3_177 195381 196070 - 3.A.1.3.14
TC HRGMv2_2156_3 HRGMv2_2156_3_178 196090 196740 - 3.A.1.3.15
STP HRGMv2_2156_3 HRGMv2_2156_3_179 196759 197565 - SBP_bac_3
pfam HRGMv2_2156_3 HRGMv2_2156_3_180 197735 198604 - DegV | FakA-like_C
TC HRGMv2_2156_3 HRGMv2_2156_3_181 198683 199861 - 9.B.174.1.1
pfam HRGMv2_2156_3 HRGMv2_2156_3_182 199943 200848 - FtsX | FtsX_ECD
TC HRGMv2_2156_3 HRGMv2_2156_3_183 200838 201521 - 3.A.1.140.1
CAZyme HRGMv2_2156_3 HRGMv2_2156_3_184 201713 203935 - GH36
Gene ID: HRGMv2_2156_3_177
Type: TC
Location: 195381 - 196070 (-)
Gene ID: HRGMv2_2156_3_178
Type: TC
Location: 196090 - 196740 (-)
Gene ID: HRGMv2_2156_3_179
Type: STP
Location: 196759 - 197565 (-)
Gene ID: HRGMv2_2156_3_180
Type: pfam
Location: 197735 - 198604 (-)
Gene ID: HRGMv2_2156_3_181
Type: TC
Location: 198683 - 199861 (-)
Gene ID: HRGMv2_2156_3_182
Type: pfam
Location: 199943 - 200848 (-)
Gene ID: HRGMv2_2156_3_183
Type: TC
Location: 200838 - 201521 (-)
Gene ID: HRGMv2_2156_3_184
Type: CAZyme
Location: 201713 - 203935 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2156_3_178 vegan > omnivore 1.47524 0.00665
HRGMv2_2156_3_179 vegan > omnivore 1.21659 0.00665

🧭 Explore Read Mapping of CGC

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