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Cluster: HRGMv2_2154_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2154_11 HRGMv2_2154_11_3 2043 3326 + 3.A.1.1.4
TC HRGMv2_2154_11 HRGMv2_2154_11_4 3406 4302 + 3.A.1.1.4
TC HRGMv2_2154_11 HRGMv2_2154_11_5 4295 5134 + 3.A.1.1.4
CAZyme HRGMv2_2154_11 HRGMv2_2154_11_6 5160 8183 + GH2
TF HRGMv2_2154_11 HRGMv2_2154_11_7 8222 9757 + HTH_AraC
TC HRGMv2_2154_11 HRGMv2_2154_11_8 9754 11520 + 8.A.59.2.1
pfam HRGMv2_2154_11 HRGMv2_2154_11_9 11563 12714 - DHHW | ALGX
TC HRGMv2_2154_11 HRGMv2_2154_11_10 12745 14085 - 2.A.50.2.1
Gene ID: HRGMv2_2154_11_3
Type: TC
Location: 2043 - 3326 (+)
Gene ID: HRGMv2_2154_11_4
Type: TC
Location: 3406 - 4302 (+)
Gene ID: HRGMv2_2154_11_5
Type: TC
Location: 4295 - 5134 (+)
Gene ID: HRGMv2_2154_11_6
Type: CAZyme
Location: 5160 - 8183 (+)
Gene ID: HRGMv2_2154_11_7
Type: TF
Location: 8222 - 9757 (+)
Gene ID: HRGMv2_2154_11_8
Type: TC
Location: 9754 - 11520 (+)
Gene ID: HRGMv2_2154_11_9
Type: pfam
Location: 11563 - 12714 (-)
Gene ID: HRGMv2_2154_11_10
Type: TC
Location: 12745 - 14085 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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