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Cluster: HRGMv2_2154_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2154_8 HRGMv2_2154_8_29 29609 30268 + 1.C.113.1.2
TC HRGMv2_2154_8 HRGMv2_2154_8_30 30745 32313 + 3.A.1.5.20
TC HRGMv2_2154_8 HRGMv2_2154_8_31 32408 33346 + 3.A.1.5.20
TC HRGMv2_2154_8 HRGMv2_2154_8_32 33351 34178 + 3.A.1.5.27
TC HRGMv2_2154_8 HRGMv2_2154_8_33 34194 34976 + 3.A.1.5.35
TC HRGMv2_2154_8 HRGMv2_2154_8_34 34969 35940 + 3.A.1.5.15
TC HRGMv2_2154_8 HRGMv2_2154_8_35 35946 37298 + 2.A.66.1.33
CAZyme HRGMv2_2154_8 HRGMv2_2154_8_36 37327 39351 - GH42
pfam HRGMv2_2154_8 HRGMv2_2154_8_37 39364 40140 - TraX
TC HRGMv2_2154_8 HRGMv2_2154_8_38 40158 41012 - 3.A.1.1.27
TC HRGMv2_2154_8 HRGMv2_2154_8_39 41009 42469 - 3.A.1.1.27
pfam HRGMv2_2154_8 HRGMv2_2154_8_40 42505 43767 - SBP_bac_8
TF HRGMv2_2154_8 HRGMv2_2154_8_41 43973 44986 - LacI
CAZyme HRGMv2_2154_8 HRGMv2_2154_8_42 45110 46336 - GH43_29
CAZyme HRGMv2_2154_8 HRGMv2_2154_8_43 46341 47597 - CBM6 | GH43_35
TC HRGMv2_2154_8 HRGMv2_2154_8_44 47601 48428 - 3.A.1.1.18
TC HRGMv2_2154_8 HRGMv2_2154_8_45 48445 49320 - 3.A.1.1.36
STP HRGMv2_2154_8 HRGMv2_2154_8_46 49392 50663 - SBP_bac_1
TF HRGMv2_2154_8 HRGMv2_2154_8_47 50777 51553 - HTH_AraC | HTH_AraC
TC HRGMv2_2154_8 HRGMv2_2154_8_48 51566 53206 - 8.A.59.2.1
Gene ID: HRGMv2_2154_8_29
Type: TC
Location: 29609 - 30268 (+)
Gene ID: HRGMv2_2154_8_30
Type: TC
Location: 30745 - 32313 (+)
Gene ID: HRGMv2_2154_8_31
Type: TC
Location: 32408 - 33346 (+)
Gene ID: HRGMv2_2154_8_32
Type: TC
Location: 33351 - 34178 (+)
Gene ID: HRGMv2_2154_8_33
Type: TC
Location: 34194 - 34976 (+)
Gene ID: HRGMv2_2154_8_34
Type: TC
Location: 34969 - 35940 (+)
Gene ID: HRGMv2_2154_8_35
Type: TC
Location: 35946 - 37298 (+)
Gene ID: HRGMv2_2154_8_36
Type: CAZyme
Location: 37327 - 39351 (-)
Gene ID: HRGMv2_2154_8_37
Type: pfam
Location: 39364 - 40140 (-)
Gene ID: HRGMv2_2154_8_38
Type: TC
Location: 40158 - 41012 (-)
Gene ID: HRGMv2_2154_8_39
Type: TC
Location: 41009 - 42469 (-)
Gene ID: HRGMv2_2154_8_40
Type: pfam
Location: 42505 - 43767 (-)
Gene ID: HRGMv2_2154_8_41
Type: TF
Location: 43973 - 44986 (-)
Gene ID: HRGMv2_2154_8_42
Type: CAZyme
Location: 45110 - 46336 (-)
Gene ID: HRGMv2_2154_8_43
Type: CAZyme
Location: 46341 - 47597 (-)
Gene ID: HRGMv2_2154_8_44
Type: TC
Location: 47601 - 48428 (-)
Gene ID: HRGMv2_2154_8_45
Type: TC
Location: 48445 - 49320 (-)
Gene ID: HRGMv2_2154_8_46
Type: STP
Location: 49392 - 50663 (-)
Gene ID: HRGMv2_2154_8_47
Type: TF
Location: 50777 - 51553 (-)
Gene ID: HRGMv2_2154_8_48
Type: TC
Location: 51566 - 53206 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2154_8_36 vegan > omnivore 1.01716 0.03808
HRGMv2_2154_8_38 vegan > omnivore 1.58755 0.03808

🧭 Explore Read Mapping of CGC

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