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Cluster: HRGMv2_2154_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2154_39 HRGMv2_2154_39_152 156423 158054 + 9.B.33.1.1
STP HRGMv2_2154_39 HRGMv2_2154_39_153 158160 159425 + SBP_bac_1
TC HRGMv2_2154_39 HRGMv2_2154_39_154 159494 160384 + 3.A.1.1.42
TC HRGMv2_2154_39 HRGMv2_2154_39_155 160381 161214 + 3.A.1.1.18
CAZyme HRGMv2_2154_39 HRGMv2_2154_39_156 161228 163153 + PL27
CAZyme HRGMv2_2154_39 HRGMv2_2154_39_157 163137 165224 + GH112
TF HRGMv2_2154_39 HRGMv2_2154_39_158 165280 165897 - 0042546
TC HRGMv2_2154_39 HRGMv2_2154_39_159 165954 167297 - 2.A.66.1.33
Gene ID: HRGMv2_2154_39_152
Type: TC
Location: 156423 - 158054 (+)
Gene ID: HRGMv2_2154_39_153
Type: STP
Location: 158160 - 159425 (+)
Gene ID: HRGMv2_2154_39_154
Type: TC
Location: 159494 - 160384 (+)
Gene ID: HRGMv2_2154_39_155
Type: TC
Location: 160381 - 161214 (+)
Gene ID: HRGMv2_2154_39_156
Type: CAZyme
Location: 161228 - 163153 (+)
Gene ID: HRGMv2_2154_39_157
Type: CAZyme
Location: 163137 - 165224 (+)
Gene ID: HRGMv2_2154_39_158
Type: TF
Location: 165280 - 165897 (-)
Gene ID: HRGMv2_2154_39_159
Type: TC
Location: 165954 - 167297 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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