dbCAN Logo

Cluster: HRGMv2_2154_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2154_31 HRGMv2_2154_31_16 17581 19884 + GH95
TC HRGMv2_2154_31 HRGMv2_2154_31_17 20029 21042 + 3.A.1.20.1
TC HRGMv2_2154_31 HRGMv2_2154_31_18 21112 22206 + 3.A.1.20.1
TC HRGMv2_2154_31 HRGMv2_2154_31_19 22196 23845 + 3.A.1.20.1
TF HRGMv2_2154_31 HRGMv2_2154_31_20 23908 24696 - HTH_AraC | HTH_AraC
TC HRGMv2_2154_31 HRGMv2_2154_31_21 24702 26465 - 8.A.59.2.1
TF HRGMv2_2154_31 HRGMv2_2154_31_22 26699 27538 + HTH_AraC | HTH_AraC
pfam HRGMv2_2154_31 HRGMv2_2154_31_23 27607 28281 + B3_4
TC HRGMv2_2154_31 HRGMv2_2154_31_24 28419 29021 + 9.B.104.1.3
Gene ID: HRGMv2_2154_31_16
Type: CAZyme
Location: 17581 - 19884 (+)
Gene ID: HRGMv2_2154_31_17
Type: TC
Location: 20029 - 21042 (+)
Gene ID: HRGMv2_2154_31_18
Type: TC
Location: 21112 - 22206 (+)
Gene ID: HRGMv2_2154_31_19
Type: TC
Location: 22196 - 23845 (+)
Gene ID: HRGMv2_2154_31_20
Type: TF
Location: 23908 - 24696 (-)
Gene ID: HRGMv2_2154_31_21
Type: TC
Location: 24702 - 26465 (-)
Gene ID: HRGMv2_2154_31_22
Type: TF
Location: 26699 - 27538 (+)
Gene ID: HRGMv2_2154_31_23
Type: pfam
Location: 27607 - 28281 (+)
Gene ID: HRGMv2_2154_31_24
Type: TC
Location: 28419 - 29021 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List