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Cluster: HRGMv2_2154_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2154_27 HRGMv2_2154_27_56 60955 62802 + 3.A.16.1.1
CAZyme HRGMv2_2154_27 HRGMv2_2154_27_57 63106 65223 + CBM34 | GH13_39
TF HRGMv2_2154_27 HRGMv2_2154_27_58 65305 65655 - HTH_5
pfam HRGMv2_2154_27 HRGMv2_2154_27_59 65951 66814 + F_bP_aldolase
TC HRGMv2_2154_27 HRGMv2_2154_27_60 67142 68464 + 3.A.1.1.45
TC HRGMv2_2154_27 HRGMv2_2154_27_61 68481 69386 + 3.A.1.1.45
TC HRGMv2_2154_27 HRGMv2_2154_27_62 69386 70222 + 3.A.1.1.45
TF HRGMv2_2154_27 HRGMv2_2154_27_63 70335 71873 + HTH_AraC | HTH_AraC
TC HRGMv2_2154_27 HRGMv2_2154_27_64 71848 73545 + 9.B.33.1.1
TC HRGMv2_2154_27 HRGMv2_2154_27_65 73526 75199 + 3.A.1.1.9
Gene ID: HRGMv2_2154_27_56
Type: TC
Location: 60955 - 62802 (+)
Gene ID: HRGMv2_2154_27_57
Type: CAZyme
Location: 63106 - 65223 (+)
Gene ID: HRGMv2_2154_27_58
Type: TF
Location: 65305 - 65655 (-)
Gene ID: HRGMv2_2154_27_59
Type: pfam
Location: 65951 - 66814 (+)
Gene ID: HRGMv2_2154_27_60
Type: TC
Location: 67142 - 68464 (+)
Gene ID: HRGMv2_2154_27_61
Type: TC
Location: 68481 - 69386 (+)
Gene ID: HRGMv2_2154_27_62
Type: TC
Location: 69386 - 70222 (+)
Gene ID: HRGMv2_2154_27_63
Type: TF
Location: 70335 - 71873 (+)
Gene ID: HRGMv2_2154_27_64
Type: TC
Location: 71848 - 73545 (+)
Gene ID: HRGMv2_2154_27_65
Type: TC
Location: 73526 - 75199 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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