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Cluster: HRGMv2_2154_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2154_15 HRGMv2_2154_15_27 25731 26420 - 3.A.1.3.14
TC HRGMv2_2154_15 HRGMv2_2154_15_28 26440 27090 - 3.A.1.3.15
STP HRGMv2_2154_15 HRGMv2_2154_15_29 27109 27915 - SBP_bac_3
pfam HRGMv2_2154_15 HRGMv2_2154_15_30 28075 28944 - DegV | FakA-like_C
TC HRGMv2_2154_15 HRGMv2_2154_15_31 29024 30202 - 9.B.174.1.1
pfam HRGMv2_2154_15 HRGMv2_2154_15_32 30284 31189 - FtsX | FtsX_ECD
TC HRGMv2_2154_15 HRGMv2_2154_15_33 31179 31862 - 3.A.1.140.1
CAZyme HRGMv2_2154_15 HRGMv2_2154_15_34 32053 34275 - GH36
Gene ID: HRGMv2_2154_15_27
Type: TC
Location: 25731 - 26420 (-)
Gene ID: HRGMv2_2154_15_28
Type: TC
Location: 26440 - 27090 (-)
Gene ID: HRGMv2_2154_15_29
Type: STP
Location: 27109 - 27915 (-)
Gene ID: HRGMv2_2154_15_30
Type: pfam
Location: 28075 - 28944 (-)
Gene ID: HRGMv2_2154_15_31
Type: TC
Location: 29024 - 30202 (-)
Gene ID: HRGMv2_2154_15_32
Type: pfam
Location: 30284 - 31189 (-)
Gene ID: HRGMv2_2154_15_33
Type: TC
Location: 31179 - 31862 (-)
Gene ID: HRGMv2_2154_15_34
Type: CAZyme
Location: 32053 - 34275 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2154_15_29 vegan > omnivore 1.07640 0.02017

🧭 Explore Read Mapping of CGC

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