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Cluster: HRGMv2_2128_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2128_3 HRGMv2_2128_3_805 946509 948356 + 3.A.16.1.2
CAZyme HRGMv2_2128_3 HRGMv2_2128_3_806 948644 950761 + CBM34 | GH13_39
pfam HRGMv2_2128_3 HRGMv2_2128_3_807 950826 951185 + Hpt
TF HRGMv2_2128_3 HRGMv2_2128_3_808 951276 951587 - HTH_5
TC HRGMv2_2128_3 HRGMv2_2128_3_809 951650 954784 - 3.A.3.6.10
pfam HRGMv2_2128_3 HRGMv2_2128_3_810 955018 955773 + LamB_YcsF
TC HRGMv2_2128_3 HRGMv2_2128_3_811 955927 957261 + 2.A.23.1.2
Gene ID: HRGMv2_2128_3_805
Type: TC
Location: 946509 - 948356 (+)
Gene ID: HRGMv2_2128_3_806
Type: CAZyme
Location: 948644 - 950761 (+)
Gene ID: HRGMv2_2128_3_807
Type: pfam
Location: 950826 - 951185 (+)
Gene ID: HRGMv2_2128_3_808
Type: TF
Location: 951276 - 951587 (-)
Gene ID: HRGMv2_2128_3_809
Type: TC
Location: 951650 - 954784 (-)
Gene ID: HRGMv2_2128_3_810
Type: pfam
Location: 955018 - 955773 (+)
Gene ID: HRGMv2_2128_3_811
Type: TC
Location: 955927 - 957261 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2128_3_807 vegan > omnivore 1.22124 0.00191

🧭 Explore Read Mapping of CGC

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