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Cluster: HRGMv2_2128_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2128_1 HRGMv2_2128_1_315 339079 340434 - 5.A.1.6.1
STP HRGMv2_2128_1 HRGMv2_2128_1_316 340623 342197 - Response_reg | Response_reg
CAZyme HRGMv2_2128_1 HRGMv2_2128_1_317 342495 344657 - GH112
pfam HRGMv2_2128_1 HRGMv2_2128_1_318 344692 345807 - APH
CAZyme HRGMv2_2128_1 HRGMv2_2128_1_319 345885 347909 - GH42
TC HRGMv2_2128_1 HRGMv2_2128_1_320 348031 348861 - 3.A.1.1.4
TC HRGMv2_2128_1 HRGMv2_2128_1_321 348854 349807 - 3.A.1.1.4
TC HRGMv2_2128_1 HRGMv2_2128_1_322 349861 351150 - 3.A.1.1.4
Gene ID: HRGMv2_2128_1_315
Type: TC
Location: 339079 - 340434 (-)
Gene ID: HRGMv2_2128_1_316
Type: STP
Location: 340623 - 342197 (-)
Gene ID: HRGMv2_2128_1_317
Type: CAZyme
Location: 342495 - 344657 (-)
Gene ID: HRGMv2_2128_1_318
Type: pfam
Location: 344692 - 345807 (-)
Gene ID: HRGMv2_2128_1_319
Type: CAZyme
Location: 345885 - 347909 (-)
Gene ID: HRGMv2_2128_1_320
Type: TC
Location: 348031 - 348861 (-)
Gene ID: HRGMv2_2128_1_321
Type: TC
Location: 348854 - 349807 (-)
Gene ID: HRGMv2_2128_1_322
Type: TC
Location: 349861 - 351150 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2128_1_315 vegan > omnivore 2.13225 0.00191
HRGMv2_2128_1_315 vegetarian > omnivore 1.68424 0.02942

🧭 Explore Read Mapping of CGC

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