dbCAN Logo

Cluster: HRGMv2_2128_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2128_3 HRGMv2_2128_3_476 577059 578585 + GH31_19
TC HRGMv2_2128_3 HRGMv2_2128_3_477 579131 579775 - 9.B.28.1.2
STP HRGMv2_2128_3 HRGMv2_2128_3_478 580333 581586 + SBP_bac_1
TC HRGMv2_2128_3 HRGMv2_2128_3_479 581686 582588 + 3.A.1.1.11
TC HRGMv2_2128_3 HRGMv2_2128_3_480 582604 583443 + 3.A.1.1.36
CAZyme HRGMv2_2128_3 HRGMv2_2128_3_481 583624 585843 + GH36
TF HRGMv2_2128_3 HRGMv2_2128_3_482 585993 586913 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2128_3 HRGMv2_2128_3_483 587225 588550 + GH4
Gene ID: HRGMv2_2128_3_476
Type: CAZyme
Location: 577059 - 578585 (+)
Gene ID: HRGMv2_2128_3_477
Type: TC
Location: 579131 - 579775 (-)
Gene ID: HRGMv2_2128_3_478
Type: STP
Location: 580333 - 581586 (+)
Gene ID: HRGMv2_2128_3_479
Type: TC
Location: 581686 - 582588 (+)
Gene ID: HRGMv2_2128_3_480
Type: TC
Location: 582604 - 583443 (+)
Gene ID: HRGMv2_2128_3_481
Type: CAZyme
Location: 583624 - 585843 (+)
Gene ID: HRGMv2_2128_3_482
Type: TF
Location: 585993 - 586913 (+)
Gene ID: HRGMv2_2128_3_483
Type: CAZyme
Location: 587225 - 588550 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2128_3_476 vegan > omnivore 1.08974 0.00191

🧭 Explore Read Mapping of CGC

← Back to Cluster List