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Cluster: HRGMv2_2128_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2128_3 HRGMv2_2128_3_160 205958 207331 - 2.A.22.5.3
TF HRGMv2_2128_3 HRGMv2_2128_3_161 207540 209129 - HTH_AraC | HTH_AraC
TC HRGMv2_2128_3 HRGMv2_2128_3_162 209148 210938 - 9.B.33.1.1
STP HRGMv2_2128_3 HRGMv2_2128_3_163 211151 212458 + SBP_bac_1
TC HRGMv2_2128_3 HRGMv2_2128_3_164 212518 213390 + 3.A.1.1.25
TC HRGMv2_2128_3 HRGMv2_2128_3_165 213387 214229 + 3.A.1.1.18
CAZyme HRGMv2_2128_3 HRGMv2_2128_3_166 214239 216407 + GH2
Gene ID: HRGMv2_2128_3_160
Type: TC
Location: 205958 - 207331 (-)
Gene ID: HRGMv2_2128_3_161
Type: TF
Location: 207540 - 209129 (-)
Gene ID: HRGMv2_2128_3_162
Type: TC
Location: 209148 - 210938 (-)
Gene ID: HRGMv2_2128_3_163
Type: STP
Location: 211151 - 212458 (+)
Gene ID: HRGMv2_2128_3_164
Type: TC
Location: 212518 - 213390 (+)
Gene ID: HRGMv2_2128_3_165
Type: TC
Location: 213387 - 214229 (+)
Gene ID: HRGMv2_2128_3_166
Type: CAZyme
Location: 214239 - 216407 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2128_3_160 vegan > omnivore 1.23475 0.00191

🧭 Explore Read Mapping of CGC

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