dbCAN Logo

Cluster: HRGMv2_2128_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2128_2 HRGMv2_2128_2_341 386630 387898 + GH29
TC HRGMv2_2128_2 HRGMv2_2128_2_342 387963 389318 + 3.A.1.1.21
TC HRGMv2_2128_2 HRGMv2_2128_2_343 389409 390329 + 3.A.1.1.20
TC HRGMv2_2128_2 HRGMv2_2128_2_344 390350 391195 + 3.A.1.1.39
CAZyme HRGMv2_2128_2 HRGMv2_2128_2_345 391226 392536 + GH29
sulfatase HRGMv2_2128_2 HRGMv2_2128_2_346 392640 393383 + S1_9
pfam HRGMv2_2128_2 HRGMv2_2128_2_347 394434 395375 - AP_endonuc_2
CAZyme HRGMv2_2128_2 HRGMv2_2128_2_348 395400 396491 - GH179
TC HRGMv2_2128_2 HRGMv2_2128_2_349 396536 397390 - 3.A.1.1.34
TC HRGMv2_2128_2 HRGMv2_2128_2_350 397390 398295 - 3.A.1.1.20
STP HRGMv2_2128_2 HRGMv2_2128_2_351 398348 399649 - SBP_bac_1
TF HRGMv2_2128_2 HRGMv2_2128_2_352 399934 402159 - HTH_AraC
TC HRGMv2_2128_2 HRGMv2_2128_2_353 402262 402885 - 3.A.2.3.2
TC HRGMv2_2128_2 HRGMv2_2128_2_354 402898 404280 - 3.A.2.3.2
TC HRGMv2_2128_2 HRGMv2_2128_2_355 404296 406065 - 3.A.2.3.2
Gene ID: HRGMv2_2128_2_341
Type: CAZyme
Location: 386630 - 387898 (+)
Gene ID: HRGMv2_2128_2_342
Type: TC
Location: 387963 - 389318 (+)
Gene ID: HRGMv2_2128_2_343
Type: TC
Location: 389409 - 390329 (+)
Gene ID: HRGMv2_2128_2_344
Type: TC
Location: 390350 - 391195 (+)
Gene ID: HRGMv2_2128_2_345
Type: CAZyme
Location: 391226 - 392536 (+)
Gene ID: HRGMv2_2128_2_346
Type: sulfatase
Location: 392640 - 393383 (+)
Gene ID: HRGMv2_2128_2_347
Type: pfam
Location: 394434 - 395375 (-)
Gene ID: HRGMv2_2128_2_348
Type: CAZyme
Location: 395400 - 396491 (-)
Gene ID: HRGMv2_2128_2_349
Type: TC
Location: 396536 - 397390 (-)
Gene ID: HRGMv2_2128_2_350
Type: TC
Location: 397390 - 398295 (-)
Gene ID: HRGMv2_2128_2_351
Type: STP
Location: 398348 - 399649 (-)
Gene ID: HRGMv2_2128_2_352
Type: TF
Location: 399934 - 402159 (-)
Gene ID: HRGMv2_2128_2_353
Type: TC
Location: 402262 - 402885 (-)
Gene ID: HRGMv2_2128_2_354
Type: TC
Location: 402898 - 404280 (-)
Gene ID: HRGMv2_2128_2_355
Type: TC
Location: 404296 - 406065 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2128_2_343 vegan > omnivore 1.03655 0.00191
HRGMv2_2128_2_343 vegetarian > omnivore 1.24349 0.02942
HRGMv2_2128_2_344 vegan > omnivore 1.12764 0.00191
HRGMv2_2128_2_345 vegan > omnivore 1.37499 0.00191
HRGMv2_2128_2_352 vegetarian > vegan 2.13415 0.01287

🧭 Explore Read Mapping of CGC

← Back to Cluster List