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Cluster: HRGMv2_2128_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2128_1 HRGMv2_2128_1_268 290405 291109 - 3.D.10.1.1
TC HRGMv2_2128_1 HRGMv2_2128_1_269 291115 292659 - 3.D.10.1.1
NULL(UNKNOWN) HRGMv2_2128_1 HRGMv2_2128_1_270 292656 293195 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2128_1 HRGMv2_2128_1_271 293206 293724 - DUF6921
TC HRGMv2_2128_1 HRGMv2_2128_1_272 293741 296095 - 3.A.3.6.10
TF HRGMv2_2128_1 HRGMv2_2128_1_273 296154 296513 - HTH_5
CAZyme HRGMv2_2128_1 HRGMv2_2128_1_274 297031 298545 - GH73
TC HRGMv2_2128_1 HRGMv2_2128_1_275 298542 298958 - 1.E.19.1.11
Gene ID: HRGMv2_2128_1_268
Type: TC
Location: 290405 - 291109 (-)
Gene ID: HRGMv2_2128_1_269
Type: TC
Location: 291115 - 292659 (-)
Gene ID: HRGMv2_2128_1_270
Type:
Location: 292656 - 293195 (-)
Gene ID: HRGMv2_2128_1_271
Type: pfam
Location: 293206 - 293724 (-)
Gene ID: HRGMv2_2128_1_272
Type: TC
Location: 293741 - 296095 (-)
Gene ID: HRGMv2_2128_1_273
Type: TF
Location: 296154 - 296513 (-)
Gene ID: HRGMv2_2128_1_274
Type: CAZyme
Location: 297031 - 298545 (-)
Gene ID: HRGMv2_2128_1_275
Type: TC
Location: 298542 - 298958 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2128_1_275 vegan > omnivore 1.22430 0.00191

🧭 Explore Read Mapping of CGC

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