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Cluster: HRGMv2_2128_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2128_1 HRGMv2_2128_1_631 691430 692077 - 2.A.38.4.3
TC HRGMv2_2128_1 HRGMv2_2128_1_632 692097 693434 - 2.A.38.4.1
pfam HRGMv2_2128_1 HRGMv2_2128_1_633 693743 694714 + Radical_SAM | BATS
TC HRGMv2_2128_1 HRGMv2_2128_1_634 694816 695361 + 3.A.1.25.3
pfam HRGMv2_2128_1 HRGMv2_2128_1_635 695443 696330 - ABC_trans_CmpB
TC HRGMv2_2128_1 HRGMv2_2128_1_636 696455 697807 - 2.A.66.1.28
TF HRGMv2_2128_1 HRGMv2_2128_1_637 697797 698249 - MarR
CAZyme HRGMv2_2128_1 HRGMv2_2128_1_638 698471 699892 - GH1
CAZyme HRGMv2_2128_1 HRGMv2_2128_1_639 699907 702489 - GH106
TC HRGMv2_2128_1 HRGMv2_2128_1_640 702505 704412 - 4.A.1.2.6
Gene ID: HRGMv2_2128_1_631
Type: TC
Location: 691430 - 692077 (-)
Gene ID: HRGMv2_2128_1_632
Type: TC
Location: 692097 - 693434 (-)
Gene ID: HRGMv2_2128_1_633
Type: pfam
Location: 693743 - 694714 (+)
Gene ID: HRGMv2_2128_1_634
Type: TC
Location: 694816 - 695361 (+)
Gene ID: HRGMv2_2128_1_635
Type: pfam
Location: 695443 - 696330 (-)
Gene ID: HRGMv2_2128_1_636
Type: TC
Location: 696455 - 697807 (-)
Gene ID: HRGMv2_2128_1_637
Type: TF
Location: 697797 - 698249 (-)
Gene ID: HRGMv2_2128_1_638
Type: CAZyme
Location: 698471 - 699892 (-)
Gene ID: HRGMv2_2128_1_639
Type: CAZyme
Location: 699907 - 702489 (-)
Gene ID: HRGMv2_2128_1_640
Type: TC
Location: 702505 - 704412 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2128_1_638 vegan > omnivore 1.45095 0.00191
HRGMv2_2128_1_640 vegan > omnivore 1.42405 0.00191

🧭 Explore Read Mapping of CGC

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