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Cluster: HRGMv2_2119_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2119_2 HRGMv2_2119_2_17 37502 39001 + 3.A.1.2.20
TC HRGMv2_2119_2 HRGMv2_2119_2_18 39003 40022 + 3.A.1.2.15
CAZyme HRGMv2_2119_2 HRGMv2_2119_2_19 40081 41559 + GH32
STP HRGMv2_2119_2 HRGMv2_2119_2_20 41581 42546 + PfkB
TC HRGMv2_2119_2 HRGMv2_2119_2_21 42872 44464 + 4.C.1.1.4
pfam HRGMv2_2119_2 HRGMv2_2119_2_22 44494 44721 + PP-binding
TC HRGMv2_2119_2 HRGMv2_2119_2_23 44792 46381 + 2.A.50.2.1
Gene ID: HRGMv2_2119_2_17
Type: TC
Location: 37502 - 39001 (+)
Gene ID: HRGMv2_2119_2_18
Type: TC
Location: 39003 - 40022 (+)
Gene ID: HRGMv2_2119_2_19
Type: CAZyme
Location: 40081 - 41559 (+)
Gene ID: HRGMv2_2119_2_20
Type: STP
Location: 41581 - 42546 (+)
Gene ID: HRGMv2_2119_2_21
Type: TC
Location: 42872 - 44464 (+)
Gene ID: HRGMv2_2119_2_22
Type: pfam
Location: 44494 - 44721 (+)
Gene ID: HRGMv2_2119_2_23
Type: TC
Location: 44792 - 46381 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2119_2_17 vegetarian > omnivore 1.11221 0.02808
HRGMv2_2119_2_18 vegan > omnivore 1.51339 0.03578
HRGMv2_2119_2_18 vegetarian > omnivore 1.61926 0.02808
HRGMv2_2119_2_20 vegan > omnivore 1.57791 0.01548
HRGMv2_2119_2_20 vegetarian > omnivore 1.22506 0.02808

🧭 Explore Read Mapping of CGC

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