Cluster: HRGMv2_2119_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2119
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2119_33 | HRGMv2_2119_33_17 | 14750 | 16453 | - | 8.A.7.1.1 |
| STP | HRGMv2_2119_33 | HRGMv2_2119_33_18 | 16590 | 16853 | - | PTS-HPr |
| TC | HRGMv2_2119_33 | HRGMv2_2119_33_19 | 17255 | 19321 | - | 4.A.2.1.20 |
| STP | HRGMv2_2119_33 | HRGMv2_2119_33_20 | 19425 | 20327 | - | PfkB |
| TF | HRGMv2_2119_33 | HRGMv2_2119_33_21 | 20327 | 21076 | - | HTH_DeoR |
| TC | HRGMv2_2119_33 | HRGMv2_2119_33_22 | 21505 | 22437 | - | 2.A.4.7.9 |
| CAZyme | HRGMv2_2119_33 | HRGMv2_2119_33_23 | 22770 | 25538 | - | GH3 |
Gene ID: HRGMv2_2119_33_17
Type: TC
Location: 14750 - 16453 (-)
Type: TC
Location: 14750 - 16453 (-)
Gene ID: HRGMv2_2119_33_18
Type: STP
Location: 16590 - 16853 (-)
Type: STP
Location: 16590 - 16853 (-)
Gene ID: HRGMv2_2119_33_19
Type: TC
Location: 17255 - 19321 (-)
Type: TC
Location: 17255 - 19321 (-)
Gene ID: HRGMv2_2119_33_20
Type: STP
Location: 19425 - 20327 (-)
Type: STP
Location: 19425 - 20327 (-)
Gene ID: HRGMv2_2119_33_21
Type: TF
Location: 20327 - 21076 (-)
Type: TF
Location: 20327 - 21076 (-)
Gene ID: HRGMv2_2119_33_22
Type: TC
Location: 21505 - 22437 (-)
Type: TC
Location: 21505 - 22437 (-)
Gene ID: HRGMv2_2119_33_23
Type: CAZyme
Location: 22770 - 25538 (-)
Type: CAZyme
Location: 22770 - 25538 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.