Cluster: HRGMv2_2119_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2119
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2119_26 | HRGMv2_2119_26_16 | 15100 | 16047 | + | 3.A.1.105.7 |
| pfam | HRGMv2_2119_26 | HRGMv2_2119_26_17 | 16135 | 17331 | + | ABC2_membrane_3 |
| pfam | HRGMv2_2119_26 | HRGMv2_2119_26_18 | 17318 | 18478 | + | ABC2_membrane | ABC2_membrane_3 |
| CAZyme | HRGMv2_2119_26 | HRGMv2_2119_26_19 | 18550 | 20364 | + | GH13_36 |
Gene ID: HRGMv2_2119_26_16
Type: TC
Location: 15100 - 16047 (+)
Type: TC
Location: 15100 - 16047 (+)
Gene ID: HRGMv2_2119_26_17
Type: pfam
Location: 16135 - 17331 (+)
Type: pfam
Location: 16135 - 17331 (+)
Gene ID: HRGMv2_2119_26_18
Type: pfam
Location: 17318 - 18478 (+)
Type: pfam
Location: 17318 - 18478 (+)
Gene ID: HRGMv2_2119_26_19
Type: CAZyme
Location: 18550 - 20364 (+)
Type: CAZyme
Location: 18550 - 20364 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.