Cluster: HRGMv2_2119_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2119
- CGC Family ID: CGCFAM_05894
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2119_25 | HRGMv2_2119_25_14 | 18548 | 20422 | + | GH13_9 |
| TC | HRGMv2_2119_25 | HRGMv2_2119_25_15 | 20436 | 21344 | + | 1.A.23.2.2 |
| TC | HRGMv2_2119_25 | HRGMv2_2119_25_16 | 21484 | 22635 | + | 9.B.10.1.1 |
| pfam | HRGMv2_2119_25 | HRGMv2_2119_25_17 | 22664 | 23626 | + | cobW | DUF1980_C |
| NULL(UNKNOWN) | HRGMv2_2119_25 | HRGMv2_2119_25_18 | 23813 | 26338 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2119_25 | HRGMv2_2119_25_19 | 26338 | 27303 | + | 3.A.1.147.3 |
Gene ID: HRGMv2_2119_25_14
Type: CAZyme
Location: 18548 - 20422 (+)
Type: CAZyme
Location: 18548 - 20422 (+)
Gene ID: HRGMv2_2119_25_15
Type: TC
Location: 20436 - 21344 (+)
Type: TC
Location: 20436 - 21344 (+)
Gene ID: HRGMv2_2119_25_16
Type: TC
Location: 21484 - 22635 (+)
Type: TC
Location: 21484 - 22635 (+)
Gene ID: HRGMv2_2119_25_17
Type: pfam
Location: 22664 - 23626 (+)
Type: pfam
Location: 22664 - 23626 (+)
Gene ID: HRGMv2_2119_25_18
Type:
Location: 23813 - 26338 (+)
Type:
Location: 23813 - 26338 (+)
Gene ID: HRGMv2_2119_25_19
Type: TC
Location: 26338 - 27303 (+)
Type: TC
Location: 26338 - 27303 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.