Cluster: HRGMv2_2119_CGC26
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2119
- CGC Family ID: CGCFAM_06097
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2119_24 | HRGMv2_2119_24_34 | 35400 | 36095 | - | 2.A.115.2.8 |
| TF | HRGMv2_2119_24 | HRGMv2_2119_24_35 | 36092 | 36553 | - | MarR |
| CAZyme | HRGMv2_2119_24 | HRGMv2_2119_24_36 | 36727 | 42057 | - | GH9 |
Gene ID: HRGMv2_2119_24_34
Type: TC
Location: 35400 - 36095 (-)
Type: TC
Location: 35400 - 36095 (-)
Gene ID: HRGMv2_2119_24_35
Type: TF
Location: 36092 - 36553 (-)
Type: TF
Location: 36092 - 36553 (-)
Gene ID: HRGMv2_2119_24_36
Type: CAZyme
Location: 36727 - 42057 (-)
Type: CAZyme
Location: 36727 - 42057 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2119_24_35 | vegetarian > omnivore | 1.02443 | 0.02808 |
| HRGMv2_2119_24_35 | vegetarian > vegan | 1.07387 | 0.01530 |