Cluster: HRGMv2_2119_CGC25
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2119
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2119_22 | HRGMv2_2119_22_30 | 38670 | 39092 | - | 1.A.22.1.8 |
| pfam | HRGMv2_2119_22 | HRGMv2_2119_22_31 | 39223 | 40767 | - | Phosphodiest | Metalloenzyme | iPGM_N |
| pfam | HRGMv2_2119_22 | HRGMv2_2119_22_32 | 40877 | 41650 | - | Exo_endo_phos |
| CAZyme | HRGMv2_2119_22 | HRGMv2_2119_22_33 | 41831 | 45463 | - | CBM4 | CBM4 | CBM4 | GH16_3 |
Gene ID: HRGMv2_2119_22_30
Type: TC
Location: 38670 - 39092 (-)
Type: TC
Location: 38670 - 39092 (-)
Gene ID: HRGMv2_2119_22_31
Type: pfam
Location: 39223 - 40767 (-)
Type: pfam
Location: 39223 - 40767 (-)
Gene ID: HRGMv2_2119_22_32
Type: pfam
Location: 40877 - 41650 (-)
Type: pfam
Location: 40877 - 41650 (-)
Gene ID: HRGMv2_2119_22_33
Type: CAZyme
Location: 41831 - 45463 (-)
Type: CAZyme
Location: 41831 - 45463 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2119_22_33 | vegetarian > omnivore | 1.00460 | 0.01497 |