Cluster: HRGMv2_2119_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2119
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2119_18 | HRGMv2_2119_18_16 | 14963 | 16462 | + | GH13_5 |
| TF | HRGMv2_2119_18 | HRGMv2_2119_18_17 | 16531 | 16860 | + | Trp_repressor |
| TF | HRGMv2_2119_18 | HRGMv2_2119_18_18 | 16987 | 17748 | - | 0042546 |
| TC | HRGMv2_2119_18 | HRGMv2_2119_18_19 | 18196 | 19482 | - | 9.A.40.2.4 |
| NULL(UNKNOWN) | HRGMv2_2119_18 | HRGMv2_2119_18_20 | 19667 | 19849 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2119_18 | HRGMv2_2119_18_21 | 20031 | 21656 | + | 3.A.1.121.4 |
Gene ID: HRGMv2_2119_18_16
Type: CAZyme
Location: 14963 - 16462 (+)
Type: CAZyme
Location: 14963 - 16462 (+)
Gene ID: HRGMv2_2119_18_17
Type: TF
Location: 16531 - 16860 (+)
Type: TF
Location: 16531 - 16860 (+)
Gene ID: HRGMv2_2119_18_18
Type: TF
Location: 16987 - 17748 (-)
Type: TF
Location: 16987 - 17748 (-)
Gene ID: HRGMv2_2119_18_19
Type: TC
Location: 18196 - 19482 (-)
Type: TC
Location: 18196 - 19482 (-)
Gene ID: HRGMv2_2119_18_20
Type:
Location: 19667 - 19849 (+)
Type:
Location: 19667 - 19849 (+)
Gene ID: HRGMv2_2119_18_21
Type: TC
Location: 20031 - 21656 (+)
Type: TC
Location: 20031 - 21656 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2119_18_16 | vegan > omnivore | 1.03192 | 0.03578 |
| HRGMv2_2119_18_17 | vegan > omnivore | 1.24899 | 0.03578 |